Sample bismark fastqc samtools trimgalore cutadapt pigz nf-core/methylseq Nextflow BISMARK_ALIGN 0.25.0 BISMARK_COVERAGE2CYTOSINE 0.25.0 BISMARK_DEDUPLICATE 0.25.0 BISMARK_GENOMEPREPARATION 0.25.0 BISMARK_METHYLATIONEXTRACTOR 0.25.0 BISMARK_REPORT 0.25.0 BISMARK_SUMMARY 0.25.0 FastQC 0.12.1 SAMTOOLS_INDEX 1.21 SAMTOOLS_SORT 1.21 TRIMGALORE 0.6.10 4.9 2.8 Workflow v4.1.0-gdb60bfe 25.04.6