Module	Section	Sample Name	Source
Bismark	alignment	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/17/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/16/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/15/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_PE_report.txt
Bismark	deduplication	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/20/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/19/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/18/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	methylation_extraction	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/26/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/25/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/24/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	m_bias	Caligus_Female_11.Caligus_Female_11_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/23/Caligus_Female_11.Caligus_Female_11_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Female_22.Caligus_Female_22_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/22/Caligus_Female_22.Caligus_Female_22_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	Caligus_Female_33.Caligus_Female_33_1_val_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/21/Caligus_Female_33.Caligus_Female_33_1_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Cutadapt	all_sections	Caligus_Female_11_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/13/Caligus_Female_11_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_11_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/14/Caligus_Female_11_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_22_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/11/Caligus_Female_22_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_22_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/12/Caligus_Female_22_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_33_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/9/Caligus_Female_33_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	Caligus_Female_33_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/10/Caligus_Female_33_2.fastq.gz_trimming_report.txt
FastQC	all_sections	Caligus_Female_11_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/5/Caligus_Female_11_1_fastqc.zip
FastQC	all_sections	Caligus_Female_11_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/6/Caligus_Female_11_2_fastqc.zip
FastQC	all_sections	Caligus_Female_22_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/3/Caligus_Female_22_1_fastqc.zip
FastQC	all_sections	Caligus_Female_22_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/4/Caligus_Female_22_2_fastqc.zip
FastQC	all_sections	Caligus_Female_33_1	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/7/Caligus_Female_33_1_fastqc.zip
FastQC	all_sections	Caligus_Female_33_2	/mmfs1/gscratch/scrubbed/sr320/nf-scratch/nxf.ocoIgfAYuy/8/Caligus_Female_33_2_fastqc.zip