start 2026-10-03T12:48:18Z host n3103
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          1 
null device 
          1 
{
  "script": "09_rda.Rmd",
  "date": "2026-10-03T12:48:28Z",
  "runtime_seconds": 502.5,
  "parameters": {
    "predictors": ["temp_summer_mean", "sal_range", "chl_summer_mean"],
    "geography": "dbMEM 1-2 (step 08)",
    "structure": "population means of PCAngsd PC1 and PC2 (step 06)",
    "permutations": 999,
    "seed": 42,
    "min_maf": 0.05,
    "allele_frequencies": "EM on genotype likelihoods per population (ANGSD Beagle, step 06)",
    "individual_dosages": "posterior mean under HWE at the all-sample frequency",
    "outlier_test": "robust (MCD) Mahalanobis on constrained-axis loadings, median-rescaled chi-square, BH q-values",
    "slurm": {
      "account": "coenv",
      "partition": "cpu-g2"
    }
  },
  "inputs": ["output/06_angsd_structure/gl/NNN_*.beagle.gz", "output/06_angsd_structure/samples/samples.tsv", "output/06_angsd_structure/tables/pca_scores.tsv", "output/08_environmental_predictors/tables/site-env-matrix.tsv"],
  "sets": {
    "env": {
      "n_units": 14,
      "n_snp": 7263864,
      "rank": 13
    },
    "all": {
      "n_units": 15,
      "n_snp": 7373591,
      "rank": 14
end 2026-10-03T12:48:29Z