{
  "script": "08_environmental_predictors.py",
  "inputs": [
    "output/04_environmental_data/site-coordinates.tsv",
    "output/07_orca_ecology_data/tables/site_predictors_ecology.tsv",
    "output/07_orca_ecology_data/metadata.json"
  ],
  "parameters": {
    "predictors": [
      "temp_summer_mean",
      "sal_range",
      "chl_summer_mean"
    ],
    "candidates": [
      "temp_summer_mean",
      "temp_range",
      "sal_annual_mean",
      "sal_range",
      "do_month_min",
      "chl_summer_mean"
    ],
    "coops": "Coos_Bay=9432780",
    "vif_threshold": 5.0,
    "years": [
      2015,
      2016,
      2017,
      2018
    ],
    "min_months": 10,
    "force": false
  },
  "sources": {
    "climatologies": "step 07 (WA Ecology monthly CTD casts, 0-5 m)",
    "coops": [
      {
        "location": "Coos_Bay",
        "station": "9432780",
        "n_days": 1459,
        "url_template": "https://api.tidesandcurrents.noaa.gov/api/prod/datagetter?product=water_temperature&station={station}&begin_date={year}0101&end_date={year}1231&interval=h&units=metric&time_zone=gmt&format=csv&application=oly-lc-WGS"
      }
    ]
  },
  "results": {
    "n_sites": 15,
    "n_sites_in_env_model": 14,
    "excluded_from_env_model": [
      "Coos_Bay"
    ],
    "distinct_stations_in_env_model": 11,
    "sites_sharing_a_station": {
      "RSR837": [
        "FB18_Wild",
        "Fidalgo_Bay"
      ],
      "SIN001": [
        "CS18_22_Wild_plate1",
        "Dogfish_Bay",
        "Ostrich_Bay"
      ]
    },
    "selected_max_vif": 2.182,
    "vif_survivors": [
      "sal_range",
      "do_month_min",
      "chl_summer_mean"
    ],
    "mem_axes_env_model": [
      "MEM1",
      "MEM2",
      "MEM3",
      "MEM4"
    ],
    "mem_axes_all_sites": [
      "MEMall1"
    ],
    "environment_pc1_pc2": [
      0.7207,
      0.1981
    ]
  },
  "produced_files": [
    "output/08_environmental_predictors/tables/site-env-matrix.tsv",
    "output/08_environmental_predictors/tables/predictor-correlation.tsv",
    "output/08_environmental_predictors/tables/within-family-correlation.tsv",
    "output/08_environmental_predictors/tables/vif.tsv",
    "output/08_environmental_predictors/tables/vif-elimination.tsv",
    "output/08_environmental_predictors/tables/candidate-sets.tsv",
    "output/08_environmental_predictors/tables/environment-pca.tsv",
    "output/08_environmental_predictors/tables/dbmem.tsv",
    "output/08_environmental_predictors/figures/predictor-correlation.png"
  ],
  "date": "2026-10-03T11:27:03.512771+00:00",
  "runtime_seconds": 1.1,
  "software": {
    "python": "3.8.5",
    "pandas": "1.1.3",
    "numpy": "1.19.2",
    "matplotlib": "3.3.2"
  }
}