PCAngsd v1.36.4
Time: 27/09/2026 21:00:40
Directory: /mmfs1/gscratch/scrubbed/sr320/github/oly-lc-WGS
Options:
	--beagle output/06_angsd_structure/gl/all.beagle.gz
	--threads 16
	--out output/06_angsd_structure/pca/pcangsd
	--admix
	--admix_K 5

PCAngsd did not converge using 2 eigenvectors!
Saved covariance matrix as output/06_angsd_structure/pca/pcangsd.cov
Saved admixture proportions as output/06_angsd_structure/pca/pcangsd.admix.5.Q
Saved ancestral allele frequencies proportions as output/06_angsd_structure/pca/pcangsd.admix.5.P

Total elapsed time: 218m9s

PCAngsd did not converge using 2 eigenvectors!
Saved covariance matrix as output/06_angsd_structure/pca/pcangsd.cov
Saved admixture proportions as output/06_angsd_structure/pca/pcangsd.admix.6.Q
Saved ancestral allele frequencies proportions as output/06_angsd_structure/pca/pcangsd.admix.6.P

Total elapsed time: 221m5s