COMMAND: samtools markdup -@ 4 -s -f output/05_realign_xbOstLuri2/metrics/per_sample/WB_18a.markdup.txt - output/05_realign_xbOstLuri2/alignments/WB_18a.sorted.bam.part READ: 71314132 WRITTEN: 71314132 EXCLUDED: 4501866 EXAMINED: 66812266 PAIRED: 66327232 SINGLE: 485034 DUPLICATE PAIR: 15658383 DUPLICATE SINGLE: 198401 DUPLICATE PAIR OPTICAL: 0 DUPLICATE SINGLE OPTICAL: 0 DUPLICATE NON PRIMARY: 0 DUPLICATE NON PRIMARY OPTICAL: 0 DUPLICATE PRIMARY TOTAL: 15856784 DUPLICATE TOTAL: 15856784 ESTIMATED_LIBRARY_SIZE: 58684035