COMMAND: samtools markdup -@ 4 -s -f output/05_realign_xbOstLuri2/metrics/per_sample/WB_11a.markdup.txt - output/05_realign_xbOstLuri2/alignments/WB_11a.sorted.bam.part READ: 76222397 WRITTEN: 76222397 EXCLUDED: 4886014 EXAMINED: 71336383 PAIRED: 70827192 SINGLE: 509191 DUPLICATE PAIR: 16016506 DUPLICATE SINGLE: 206973 DUPLICATE PAIR OPTICAL: 0 DUPLICATE SINGLE OPTICAL: 0 DUPLICATE NON PRIMARY: 0 DUPLICATE NON PRIMARY OPTICAL: 0 DUPLICATE PRIMARY TOTAL: 16223479 DUPLICATE TOTAL: 16223479 ESTIMATED_LIBRARY_SIZE: 65989071