COMMAND: samtools markdup -@ 4 -s -f output/05_realign_xbOstLuri2/metrics/per_sample/MB_3a.markdup.txt - output/05_realign_xbOstLuri2/alignments/MB_3a.sorted.bam.part READ: 63743730 WRITTEN: 63743730 EXCLUDED: 3758095 EXAMINED: 59985635 PAIRED: 59623704 SINGLE: 361931 DUPLICATE PAIR: 11239590 DUPLICATE SINGLE: 132087 DUPLICATE PAIR OPTICAL: 0 DUPLICATE SINGLE OPTICAL: 0 DUPLICATE NON PRIMARY: 0 DUPLICATE NON PRIMARY OPTICAL: 0 DUPLICATE PRIMARY TOTAL: 11371677 DUPLICATE TOTAL: 11371677 ESTIMATED_LIBRARY_SIZE: 68787386