COMMAND: samtools markdup -@ 4 -s -f output/05_realign_xbOstLuri2/metrics/per_sample/MB_2a.markdup.txt - output/05_realign_xbOstLuri2/alignments/MB_2a.sorted.bam.part READ: 68941400 WRITTEN: 68941400 EXCLUDED: 4168973 EXAMINED: 64772427 PAIRED: 64374044 SINGLE: 398383 DUPLICATE PAIR: 13155564 DUPLICATE SINGLE: 155718 DUPLICATE PAIR OPTICAL: 0 DUPLICATE SINGLE OPTICAL: 0 DUPLICATE NON PRIMARY: 0 DUPLICATE NON PRIMARY OPTICAL: 0 DUPLICATE PRIMARY TOTAL: 13311282 DUPLICATE TOTAL: 13311282 ESTIMATED_LIBRARY_SIZE: 67609612