COMMAND: samtools markdup -@ 4 -s -f output/05_realign_xbOstLuri2/metrics/per_sample/MB_13a.markdup.txt - output/05_realign_xbOstLuri2/alignments/MB_13a.sorted.bam.part READ: 73334623 WRITTEN: 73334623 EXCLUDED: 4574215 EXAMINED: 68760408 PAIRED: 68312220 SINGLE: 448188 DUPLICATE PAIR: 15915929 DUPLICATE SINGLE: 184749 DUPLICATE PAIR OPTICAL: 0 DUPLICATE SINGLE OPTICAL: 0 DUPLICATE NON PRIMARY: 0 DUPLICATE NON PRIMARY OPTICAL: 0 DUPLICATE PRIMARY TOTAL: 16100678 DUPLICATE TOTAL: 16100678 ESTIMATED_LIBRARY_SIZE: 61407391