COMMAND: samtools markdup -@ 4 -s -f output/05_realign_xbOstLuri2/metrics/per_sample/MB_11a.markdup.txt - output/05_realign_xbOstLuri2/alignments/MB_11a.sorted.bam.part READ: 69094007 WRITTEN: 69094007 EXCLUDED: 4351490 EXAMINED: 64742517 PAIRED: 64352822 SINGLE: 389695 DUPLICATE PAIR: 12783759 DUPLICATE SINGLE: 152995 DUPLICATE PAIR OPTICAL: 0 DUPLICATE SINGLE OPTICAL: 0 DUPLICATE NON PRIMARY: 0 DUPLICATE NON PRIMARY OPTICAL: 0 DUPLICATE PRIMARY TOTAL: 12936754 DUPLICATE TOTAL: 12936754 ESTIMATED_LIBRARY_SIZE: 69863193