COMMAND: samtools markdup -@ 4 -s -f output/05_realign_xbOstLuri2/metrics/per_sample/LS_13a.markdup.txt - output/05_realign_xbOstLuri2/alignments/LS_13a.sorted.bam.part
READ: 53836839
WRITTEN: 53836839
EXCLUDED: 3252144
EXAMINED: 50584695
PAIRED: 50275382
SINGLE: 309313
DUPLICATE PAIR: 9285472
DUPLICATE SINGLE: 109086
DUPLICATE PAIR OPTICAL: 0
DUPLICATE SINGLE OPTICAL: 0
DUPLICATE NON PRIMARY: 0
DUPLICATE NON PRIMARY OPTICAL: 0
DUPLICATE PRIMARY TOTAL: 9394558
DUPLICATE TOTAL: 9394558
ESTIMATED_LIBRARY_SIZE: 59386728