2025-11-17 10:15:05,476 [INFO] Running samtools stats for Blank_plate2
2025-11-17 10:15:05,550 [INFO] Running samtools stats for CS18_22_Wild_plate1_A7
2025-11-17 10:18:01,830 [INFO] Running samtools stats for CS18_22_Wild_plate1_C6
2025-11-17 10:20:53,227 [INFO] Running samtools stats for CS18_22_Wild_plate1_D6
2025-11-17 10:23:22,305 [INFO] Running samtools stats for CS18_22_Wild_plate1_E6
2025-11-17 10:26:27,856 [INFO] Running samtools stats for CS18_22_Wild_plate1_F6
2025-11-17 10:29:15,974 [INFO] Running samtools stats for CS18_22_Wild_plate1_G6
2025-11-17 10:32:06,703 [INFO] Running samtools stats for CS18_22_Wild_plate1_H6
2025-11-17 10:35:03,709 [INFO] Running samtools stats for Coos_Bay_10
2025-11-17 10:38:25,689 [INFO] Running samtools stats for Coos_Bay_4
2025-11-17 10:41:38,877 [INFO] Running samtools stats for Coos_Bay_5
2025-11-17 10:44:59,379 [INFO] Running samtools stats for Coos_Bay_6
2025-11-17 10:48:05,720 [INFO] Running samtools stats for Coos_Bay_7
2025-11-17 10:50:08,039 [INFO] Running samtools stats for Coos_Bay_8
2025-11-17 10:52:45,089 [INFO] Running samtools stats for Coos_Bay_9
2025-11-17 10:55:48,151 [INFO] Running samtools stats for Dogfish_Bay_10
2025-11-17 10:58:48,430 [INFO] Running samtools stats for Dogfish_Bay_11
2025-11-17 11:01:51,851 [INFO] Running samtools stats for Dogfish_Bay_12
2025-11-17 11:04:43,671 [INFO] Running samtools stats for Dogfish_Bay_13
2025-11-17 11:07:24,660 [INFO] Running samtools stats for Dogfish_Bay_14
2025-11-17 11:10:00,836 [INFO] Running samtools stats for Dogfish_Bay_7
2025-11-17 11:12:53,156 [INFO] Running samtools stats for Dogfish_Bay_8
2025-11-17 11:16:01,757 [INFO] Running samtools stats for Dogfish_Bay_9
2025-11-17 11:19:09,773 [INFO] Running samtools stats for FB18_Wild_10
2025-11-17 11:21:17,648 [INFO] Running samtools stats for FB18_Wild_11
2025-11-17 11:23:52,199 [INFO] Running samtools stats for FB18_Wild_12
2025-11-17 11:26:30,115 [INFO] Running samtools stats for FB18_Wild_8
2025-11-17 11:29:18,621 [INFO] Running samtools stats for FB18_Wild_9
2025-11-17 11:32:08,113 [INFO] Running samtools stats for Fidalgo_Bay_10
2025-11-17 11:35:12,995 [INFO] Running samtools stats for Fidalgo_Bay_11
2025-11-17 11:38:25,548 [INFO] Running samtools stats for Fidalgo_Bay_12
2025-11-17 11:41:04,567 [INFO] Running samtools stats for Fidalgo_Bay_8
2025-11-17 11:44:03,229 [INFO] Running samtools stats for Fidalgo_Bay_9
2025-11-17 11:47:17,757 [INFO] Running samtools stats for HC18_Triton_Wild_10
2025-11-17 11:49:18,250 [INFO] Running samtools stats for HC18_Triton_Wild_11
2025-11-17 11:51:45,611 [INFO] Running samtools stats for HC18_Triton_Wild_12
2025-11-17 11:54:46,359 [INFO] Running samtools stats for HC18_Triton_Wild_15
2025-11-17 11:56:57,545 [INFO] Running samtools stats for HC18_Triton_Wild_16
2025-11-17 11:59:07,439 [INFO] Running samtools stats for HC18_Triton_Wild_7
2025-11-17 12:01:43,103 [INFO] Running samtools stats for HC18_Triton_Wild_8
2025-11-17 12:04:41,681 [INFO] Running samtools stats for HC18_Triton_Wild_9
2025-11-17 12:07:21,170 [INFO] Running samtools stats for LS_10a
2025-11-17 12:10:16,393 [INFO] Running samtools stats for LS_11a
2025-11-17 12:13:32,824 [INFO] Running samtools stats for LS_12a
2025-11-17 12:16:52,577 [INFO] Running samtools stats for LS_13a
2025-11-17 12:19:12,686 [INFO] Running samtools stats for LS_14a
2025-11-17 12:22:20,496 [INFO] Running samtools stats for LS_8a
2025-11-17 12:25:11,820 [INFO] Running samtools stats for LS_9a
2025-11-17 12:28:08,553 [INFO] Running samtools stats for MB_11a
2025-11-17 12:31:06,196 [INFO] Running samtools stats for MB_12a
2025-11-17 12:33:58,448 [INFO] Running samtools stats for MB_13a
2025-11-17 12:37:02,622 [INFO] Running samtools stats for MB_14a
2025-11-17 12:39:31,144 [INFO] Running samtools stats for MB_1a
2025-11-17 12:42:08,105 [INFO] Running samtools stats for MB_2a
2025-11-17 12:45:02,193 [INFO] Running samtools stats for MB_3a
2025-11-17 12:47:45,533 [INFO] Running samtools stats for MB_4a
2025-11-17 12:50:51,999 [INFO] Running samtools stats for NS18_Disco_Wild_10
2025-11-17 12:53:31,923 [INFO] Running samtools stats for NS18_Disco_Wild_11
2025-11-17 12:56:06,367 [INFO] Running samtools stats for NS18_Disco_Wild_12
2025-11-17 12:59:15,381 [INFO] Running samtools stats for NS18_Disco_Wild_13
2025-11-17 13:02:04,653 [INFO] Running samtools stats for NS18_Disco_Wild_14
2025-11-17 13:04:13,593 [INFO] Running samtools stats for NS18_Disco_Wild_15
2025-11-17 13:07:07,964 [INFO] Running samtools stats for NS18_Disco_Wild_8
2025-11-17 13:10:01,588 [INFO] Running samtools stats for NS18_Disco_Wild_9
2025-11-17 13:12:47,674 [INFO] Running samtools stats for NS18_Sequim_Wild_4
2025-11-17 13:15:35,705 [INFO] Running samtools stats for NS18_Sequim_Wild_5
2025-11-17 13:18:04,352 [INFO] Running samtools stats for NS18_Sequim_Wild_55
2025-11-17 13:20:43,811 [INFO] Running samtools stats for NS18_Sequim_Wild_56
2025-11-17 13:23:12,509 [INFO] Running samtools stats for NS18_Sequim_Wild_57
2025-11-17 13:26:06,956 [INFO] Running samtools stats for NS18_Sequim_Wild_58
2025-11-17 13:28:26,556 [INFO] Running samtools stats for NS18_Sequim_Wild_6
2025-11-17 13:31:20,222 [INFO] Running samtools stats for NS18_Sequim_Wild_7
2025-11-17 13:33:52,155 [INFO] Running samtools stats for Ostrich_Bay_10
2025-11-17 13:36:48,737 [INFO] Running samtools stats for Ostrich_Bay_11
2025-11-17 13:39:57,100 [INFO] Running samtools stats for Ostrich_Bay_12
2025-11-17 13:43:09,126 [INFO] Running samtools stats for Ostrich_Bay_13
2025-11-17 13:46:22,317 [INFO] Running samtools stats for Ostrich_Bay_14
2025-11-17 13:49:34,138 [INFO] Running samtools stats for Ostrich_Bay_7
2025-11-17 13:52:26,341 [INFO] Running samtools stats for Ostrich_Bay_8
2025-11-17 13:55:32,796 [INFO] Running samtools stats for Ostrich_Bay_9
2025-11-17 13:58:40,340 [INFO] Running samtools stats for PGB18_Wild_10
2025-11-17 14:01:27,548 [INFO] Running samtools stats for PGB18_Wild_11
2025-11-17 14:04:11,374 [INFO] Running samtools stats for PGB18_Wild_12
2025-11-17 14:07:06,711 [INFO] Running samtools stats for PGB18_Wild_13
2025-11-17 14:10:01,549 [INFO] Running samtools stats for PGB18_Wild_14
2025-11-17 14:12:50,284 [INFO] Running samtools stats for PGB18_Wild_15
2025-11-17 14:15:40,387 [INFO] Running samtools stats for PGB18_Wild_8
2025-11-17 14:18:14,809 [INFO] Running samtools stats for PGB18_Wild_9
2025-11-17 14:20:44,381 [INFO] Running samtools stats for SS18_North_Bay_Wild_11
2025-11-17 14:23:27,917 [INFO] Running samtools stats for SS18_North_Bay_Wild_13
2025-11-17 14:26:02,986 [INFO] Running samtools stats for SS18_North_Bay_Wild_14
2025-11-17 14:28:53,681 [INFO] Running samtools stats for SS18_North_Bay_Wild_15
2025-11-17 14:31:49,562 [INFO] Running samtools stats for SS18_North_Bay_Wild_16
2025-11-17 14:34:42,856 [INFO] Running samtools stats for SS18_North_Bay_Wild_17
2025-11-17 14:37:47,174 [INFO] Running samtools stats for SS18_North_Bay_Wild_18
2025-11-17 14:40:22,106 [INFO] Running samtools stats for SS18_North_Bay_Wild_19
2025-11-17 14:43:04,254 [INFO] Running samtools stats for Squaxin_Island_10a
2025-11-17 14:46:13,693 [INFO] Running samtools stats for Squaxin_Island_11a
2025-11-17 14:49:03,412 [INFO] Running samtools stats for Squaxin_Island_12a
2025-11-17 14:52:30,662 [INFO] Running samtools stats for Squaxin_Island_6a
2025-11-17 14:55:21,512 [INFO] Running samtools stats for Squaxin_Island_7a
2025-11-17 14:58:28,181 [INFO] Running samtools stats for Squaxin_Island_8a
2025-11-17 15:01:33,742 [INFO] Running samtools stats for Squaxin_Island_9a
2025-11-17 15:04:53,016 [INFO] Running samtools stats for WB_11a
2025-11-17 15:08:02,977 [INFO] Running samtools stats for WB_12a
2025-11-17 15:10:50,696 [INFO] Running samtools stats for WB_13a
2025-11-17 15:14:02,080 [INFO] Running samtools stats for WB_14a
2025-11-17 15:17:03,956 [INFO] Running samtools stats for WB_15a
2025-11-17 15:20:04,495 [INFO] Running samtools stats for WB_16a
2025-11-17 15:23:13,569 [INFO] Running samtools stats for WB_17a
2025-11-17 15:25:59,915 [INFO] Running samtools stats for WB_18a
2025-11-17 15:29:01,076 [INFO] Collecting base counts for Blank_plate1
2025-11-17 15:29:01,712 [INFO] Collecting base counts for Blank_plate2
2025-11-17 15:29:01,853 [INFO] Collecting base counts for CS18_22_Wild_plate1_A7
2025-11-17 15:30:09,266 [INFO] Collecting base counts for CS18_22_Wild_plate1_C6
2025-11-17 15:31:14,860 [INFO] Collecting base counts for CS18_22_Wild_plate1_D6
2025-11-17 15:32:44,278 [INFO] Collecting base counts for CS18_22_Wild_plate1_E6
2025-11-17 15:33:48,499 [INFO] Collecting base counts for CS18_22_Wild_plate1_F6
2025-11-17 15:34:54,587 [INFO] Collecting base counts for CS18_22_Wild_plate1_G6
2025-11-17 15:36:14,550 [INFO] Collecting base counts for CS18_22_Wild_plate1_H6
2025-11-17 15:37:28,925 [INFO] Collecting base counts for Coos_Bay_10
2025-11-17 15:38:38,164 [INFO] Collecting base counts for Coos_Bay_4
2025-11-17 15:39:46,013 [INFO] Collecting base counts for Coos_Bay_5
2025-11-17 15:41:00,361 [INFO] Collecting base counts for Coos_Bay_6
2025-11-17 15:42:23,781 [INFO] Collecting base counts for Coos_Bay_7
2025-11-17 15:43:41,481 [INFO] Collecting base counts for Coos_Bay_8
2025-11-17 15:45:04,865 [INFO] Collecting base counts for Coos_Bay_9
2025-11-17 15:46:16,928 [INFO] Collecting base counts for Dogfish_Bay_10
2025-11-17 15:47:30,131 [INFO] Collecting base counts for Dogfish_Bay_11
2025-11-17 15:48:49,918 [INFO] Collecting base counts for Dogfish_Bay_12
2025-11-17 15:50:00,553 [INFO] Collecting base counts for Dogfish_Bay_13
2025-11-17 15:51:02,959 [INFO] Collecting base counts for Dogfish_Bay_14
2025-11-17 15:52:18,114 [INFO] Collecting base counts for Dogfish_Bay_7
2025-11-17 15:53:57,828 [INFO] Collecting base counts for Dogfish_Bay_8
2025-11-17 15:55:40,295 [INFO] Collecting base counts for Dogfish_Bay_9
2025-11-17 15:57:29,864 [INFO] Collecting base counts for FB18_Wild_10
2025-11-17 15:59:04,526 [INFO] Collecting base counts for FB18_Wild_11
2025-11-17 16:01:01,936 [INFO] Collecting base counts for FB18_Wild_12
2025-11-17 16:03:03,110 [INFO] Collecting base counts for FB18_Wild_8
2025-11-17 16:05:20,600 [INFO] Collecting base counts for FB18_Wild_9
2025-11-17 16:08:01,238 [INFO] Collecting base counts for Fidalgo_Bay_10
2025-11-17 16:10:37,322 [INFO] Collecting base counts for Fidalgo_Bay_11
2025-11-17 16:13:29,812 [INFO] Collecting base counts for Fidalgo_Bay_12
2025-11-17 16:16:26,902 [INFO] Collecting base counts for Fidalgo_Bay_8
2025-11-17 16:19:23,465 [INFO] Collecting base counts for Fidalgo_Bay_9
2025-11-17 16:21:59,712 [INFO] Collecting base counts for HC18_Triton_Wild_10
2025-11-17 16:24:14,393 [INFO] Collecting base counts for HC18_Triton_Wild_11
2025-11-17 16:26:20,834 [INFO] Collecting base counts for HC18_Triton_Wild_12
2025-11-17 16:28:42,793 [INFO] Collecting base counts for HC18_Triton_Wild_15
2025-11-17 16:30:52,464 [INFO] Collecting base counts for HC18_Triton_Wild_16
2025-11-17 16:33:06,161 [INFO] Collecting base counts for HC18_Triton_Wild_7
2025-11-17 16:35:43,889 [INFO] Collecting base counts for HC18_Triton_Wild_8
2025-11-17 16:38:15,286 [INFO] Collecting base counts for HC18_Triton_Wild_9
2025-11-17 16:40:04,216 [INFO] Collecting base counts for LS_10a
2025-11-17 16:41:39,558 [INFO] Collecting base counts for LS_11a
2025-11-17 16:43:34,675 [INFO] Collecting base counts for LS_12a
2025-11-17 16:45:28,754 [INFO] Collecting base counts for LS_13a
2025-11-17 16:47:07,071 [INFO] Collecting base counts for LS_14a
2025-11-17 16:49:04,634 [INFO] Collecting base counts for LS_8a
2025-11-17 16:50:26,541 [INFO] Collecting base counts for LS_9a
2025-11-17 16:52:18,597 [INFO] Collecting base counts for MB_11a
2025-11-17 16:53:49,000 [INFO] Collecting base counts for MB_12a
2025-11-17 16:55:10,994 [INFO] Collecting base counts for MB_13a
2025-11-17 16:56:48,368 [INFO] Collecting base counts for MB_14a
2025-11-17 16:58:21,643 [INFO] Collecting base counts for MB_1a
2025-11-17 16:59:42,362 [INFO] Collecting base counts for MB_2a
2025-11-17 17:01:13,437 [INFO] Collecting base counts for MB_3a
2025-11-17 17:02:34,587 [INFO] Collecting base counts for MB_4a
2025-11-17 17:03:54,078 [INFO] Collecting base counts for NS18_Disco_Wild_10
2025-11-17 17:05:07,801 [INFO] Collecting base counts for NS18_Disco_Wild_11
2025-11-17 17:06:40,516 [INFO] Collecting base counts for NS18_Disco_Wild_12
2025-11-17 17:08:30,451 [INFO] Collecting base counts for NS18_Disco_Wild_13
2025-11-17 17:10:06,539 [INFO] Collecting base counts for NS18_Disco_Wild_14
2025-11-17 17:11:34,685 [INFO] Collecting base counts for NS18_Disco_Wild_15
2025-11-17 17:13:08,025 [INFO] Collecting base counts for NS18_Disco_Wild_8
2025-11-17 17:14:35,724 [INFO] Collecting base counts for NS18_Disco_Wild_9
2025-11-17 17:15:56,596 [INFO] Collecting base counts for NS18_Sequim_Wild_4
2025-11-17 17:17:40,459 [INFO] Collecting base counts for NS18_Sequim_Wild_5
2025-11-17 17:18:57,197 [INFO] Collecting base counts for NS18_Sequim_Wild_55
2025-11-17 17:20:26,750 [INFO] Collecting base counts for NS18_Sequim_Wild_56
2025-11-17 17:21:38,950 [INFO] Collecting base counts for NS18_Sequim_Wild_57
2025-11-17 17:22:47,665 [INFO] Collecting base counts for NS18_Sequim_Wild_58
2025-11-17 17:24:15,849 [INFO] Collecting base counts for NS18_Sequim_Wild_6
2025-11-17 17:25:34,213 [INFO] Collecting base counts for NS18_Sequim_Wild_7
2025-11-17 17:27:11,649 [INFO] Collecting base counts for Ostrich_Bay_10
2025-11-17 17:28:42,339 [INFO] Collecting base counts for Ostrich_Bay_11
2025-11-17 17:30:10,256 [INFO] Collecting base counts for Ostrich_Bay_12
2025-11-17 17:31:45,504 [INFO] Collecting base counts for Ostrich_Bay_13
2025-11-17 17:33:18,092 [INFO] Collecting base counts for Ostrich_Bay_14
2025-11-17 17:34:53,374 [INFO] Collecting base counts for Ostrich_Bay_7
2025-11-17 17:36:23,430 [INFO] Collecting base counts for Ostrich_Bay_8
2025-11-17 17:37:38,678 [INFO] Collecting base counts for Ostrich_Bay_9
2025-11-17 17:38:56,261 [INFO] Collecting base counts for PGB18_Wild_10
2025-11-17 17:40:45,540 [INFO] Collecting base counts for PGB18_Wild_11
2025-11-17 17:42:22,415 [INFO] Collecting base counts for PGB18_Wild_12
2025-11-17 17:43:42,041 [INFO] Collecting base counts for PGB18_Wild_13
2025-11-17 17:45:24,346 [INFO] Collecting base counts for PGB18_Wild_14
2025-11-17 17:47:07,136 [INFO] Collecting base counts for PGB18_Wild_15
2025-11-17 17:49:12,418 [INFO] Collecting base counts for PGB18_Wild_8
2025-11-17 17:51:52,145 [INFO] Collecting base counts for PGB18_Wild_9
2025-11-17 17:53:24,915 [INFO] Collecting base counts for SS18_North_Bay_Wild_11
2025-11-17 17:54:58,371 [INFO] Collecting base counts for SS18_North_Bay_Wild_13
2025-11-17 17:56:28,360 [INFO] Collecting base counts for SS18_North_Bay_Wild_14
2025-11-17 17:58:04,785 [INFO] Collecting base counts for SS18_North_Bay_Wild_15
2025-11-17 17:59:47,502 [INFO] Collecting base counts for SS18_North_Bay_Wild_16
2025-11-17 18:01:43,458 [INFO] Collecting base counts for SS18_North_Bay_Wild_17
2025-11-17 18:03:40,282 [INFO] Collecting base counts for SS18_North_Bay_Wild_18
2025-11-17 18:05:01,673 [INFO] Collecting base counts for SS18_North_Bay_Wild_19
2025-11-17 18:06:21,513 [INFO] Collecting base counts for Squaxin_Island_10a
2025-11-17 18:07:51,535 [INFO] Collecting base counts for Squaxin_Island_11a
2025-11-17 18:09:34,780 [INFO] Collecting base counts for Squaxin_Island_12a
2025-11-17 18:11:16,176 [INFO] Collecting base counts for Squaxin_Island_6a
2025-11-17 18:12:48,708 [INFO] Collecting base counts for Squaxin_Island_7a
2025-11-17 18:14:23,880 [INFO] Collecting base counts for Squaxin_Island_8a
2025-11-17 18:16:01,530 [INFO] Collecting base counts for Squaxin_Island_9a
2025-11-17 18:18:01,333 [INFO] Collecting base counts for WB_11a
2025-11-17 18:19:26,420 [INFO] Collecting base counts for WB_12a
2025-11-17 18:20:37,667 [INFO] Collecting base counts for WB_13a
2025-11-17 18:21:50,767 [INFO] Collecting base counts for WB_14a
2025-11-17 18:23:06,873 [INFO] Collecting base counts for WB_15a
2025-11-17 18:24:17,379 [INFO] Collecting base counts for WB_16a
2025-11-17 18:25:31,454 [INFO] Collecting base counts for WB_17a
2025-11-17 18:26:28,260 [INFO] Collecting base counts for WB_18a
2025-11-17 18:27:47,015 [INFO] BAM-based variation summary complete. Outputs at /mmfs1/gscratch/scrubbed/sr320/github/oly-lc-WGS/output/02_bam_summary