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D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/62--1F8.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/64--1H8.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/64--1H8.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/65--1A9.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/65--1A9.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/66--1B9.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/66--1B9.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/68--1D9.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/68--1D9.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/69--1E9.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/69--1E9.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/73--1A10.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/73--1A10.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/74--1B10.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/74--1B10.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/75--1C10.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/75--1C10.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/76--1D10.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/76--1D10.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/86--1F11.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/86--1F11.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/89--1A12.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/89--1A12.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/9--1A2.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/9--1A2.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/96--1H12.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/96--1H12.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/99--2C1.fastp-trim.report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/99--2C1.fastp-trim.report.html D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/multiqc_data/mqc_fastqc_adapter_content_plot_1.txt -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/multiqc_data_1/mqc_fastqc_adapter_content_plot_1.txt D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/multiqc_data/multiqc_citations.txt -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/multiqc_data_1/multiqc_citations.txt D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/multiqc_data/multiqc_data.json -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/multiqc_data_1/multiqc_data.json D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/multiqc_data/multiqc_fastqc.txt -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/multiqc_data_1/multiqc_fastqc.txt D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/multiqc_data/multiqc_general_stats.txt -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/multiqc_data_1/multiqc_general_stats.txt D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/multiqc_report.html -> D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqc/multiqc_report_1.html D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A1/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP1/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A1/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP1/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A1/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP1/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A1/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP1/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A1/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP1/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A10/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP2/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A10/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP4/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A10/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP2/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A10/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP4/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A10/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP4/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A12/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP3/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A12/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP3/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A2/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP4/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A2/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP4/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A8/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP1/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A8/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP2/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A8/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP1/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A8/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP2/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A8/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP2/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A9/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP2/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1A9/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP2/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B1/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP3/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B1/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP3/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B1/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP3/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B1/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP3/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B1/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP3/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B10/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP4/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B10/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP4/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B10/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP4/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B10/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP4/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B10/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP4/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B2/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP1/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B2/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP3/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B2/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP1/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B2/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP3/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B2/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP3/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B5/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP2/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B5/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP1/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B5/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP2/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B5/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP1/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B5/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP1/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B9/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP3/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B9/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP1/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1B9/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP3/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1C10/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP4/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1C10/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP4/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1C10/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP4/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1C10/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP4/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1C10/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP4/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1C4/1C4.cov_refs.gtf -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP4/ACR-139-TP4.cov_refs.gtf D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1C4/1C4.gtf -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP4/ACR-139-TP4.gtf D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1C4/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP1/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1C4/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP4/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1C4/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP1/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1C4/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP4/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1C4/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP4/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D10/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP2/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D10/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP2/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D3/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP3/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D3/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP4/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D3/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP3/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D3/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP4/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D3/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP4/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D4/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP4/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D4/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP4/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D4/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP1/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D6/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP1/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D6/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP2/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D6/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP1/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D6/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP2/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D6/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP2/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D8/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP2/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D8/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP2/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D9/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP3/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D9/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP4/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D9/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP3/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D9/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP4/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1D9/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP4/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E1/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP4/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E1/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP2/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E1/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP4/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E3/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP1/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E3/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP2/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E3/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP1/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E3/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP2/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E3/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP2/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E5/1E5.cov_refs.gtf -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP3/ACR-139-TP3.cov_refs.gtf D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E5/1E5.gtf -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP3/ACR-139-TP3.gtf D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E5/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP2/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E5/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP3/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E5/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP2/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E5/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP3/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E5/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP3/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E9/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP3/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E9/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-237-TP1/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E9/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP3/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E9/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-237-TP1/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1E9/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-237-TP1/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F11/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP4/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F11/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP2/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F11/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP4/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F11/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP2/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F11/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-173-TP2/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F4/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP1/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F4/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP3/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F4/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP1/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F4/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP3/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F4/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP3/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F8/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP2/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F8/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP2/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1F8/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP3/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1G5/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP3/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1G5/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP3/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H11/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP4/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H11/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP4/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H12/e2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-237-TP1/e2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H12/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP3/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H12/i2t.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-237-TP1/i2t.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H12/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP3/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H12/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP3/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H6/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP3/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H6/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-225-TP1/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H6/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP3/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H7/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP3/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H7/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP3/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H7/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-229-TP3/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H8/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP4/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H8/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP4/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/1H8/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP4/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2B2/2B2.cov_refs.gtf -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP1/ACR-145-TP1.cov_refs.gtf D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2B2/2B2.gtf -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP1/ACR-145-TP1.gtf D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2B2/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP1/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2B2/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP1/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2B2/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP1/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2B3/2B3.cov_refs.gtf -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP2/ACR-139-TP2.cov_refs.gtf D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2B3/2B3.gtf -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP2/ACR-139-TP2.gtf D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2B3/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP2/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2B3/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP2/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2B3/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP2/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2C2/2C2.cov_refs.gtf -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP1/ACR-139-TP1.cov_refs.gtf D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2C2/2C2.gtf -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP1/ACR-139-TP1.gtf D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2C2/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP1/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2C2/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP1/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2C2/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-139-TP1/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2D2/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP1/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2D2/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP1/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2D2/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-150-TP1/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2E2/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP1/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2E2/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP1/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2E2/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-186-TP1/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2G1/e_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP2/e_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2G1/i_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP2/i_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/2G1/t_data.ctab -> D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/ACR-145-TP2/t_data.ctab D-Apul/output/02.20-D-Apul-RNAseq-alignment-HiSat2/Porites_evermanni_v1.stringtie.gtf -> E-Peve/output/02.20-E-Peve-RNAseq-alignment-HiSat2/Porites_evermanni_v1.stringtie.gtf D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_10051.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_10452.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_11131.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_11565.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_11625.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_12081.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_11627.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_12083.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_11631.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_12087.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_13111.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_13647.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_13595.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14146.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_13614.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14165.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_13948.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14532.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14018.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14605.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14022.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14610.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14046.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14633.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14101.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14692.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_14476.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_15097.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_15693.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_16354.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_16466.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_17173.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_16477.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_17186.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_16483.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_17192.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_16532.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_17245.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_16887.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_17623.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1748.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1819.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1760.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1832.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1761.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1833.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1764.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1836.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1795.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1865.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1882.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1950.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1883.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1951.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_2291.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_2372.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_2408.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_2500.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_2646.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_2746.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_2986.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3109.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3095.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3226.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3096.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3227.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3169.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3301.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3873.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4026.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3879.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4034.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3880.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4036.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4571.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4752.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4573.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4754.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5303.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5516.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5304.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5517.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5386.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5603.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5466.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5685.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9008.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9366.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9021.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9380.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9059.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9420.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9148.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9512.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9167.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9532.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9335.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9706.txt D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9408.txt -> D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9786.txt D-Apul/output/05-Apul-lncRNA/counts.txt -> D-Apul/output/08-Apul-lncRNA/counts.txt D-Apul/output/05-Apul-lncRNA/counts.txt.summary -> D-Apul/output/08-Apul-lncRNA/counts.txt.summary D-Apul/output/05-Apul-lncRNA/lncRNAs.gtf -> D-Apul/output/08-Apul-lncRNA/lncRNAs.gtf D-Apul/output/05-Apul-lncRNA/test_lncRNAs.gtf -> D-Apul/output/08-Apul-lncRNA/test_lncRNAs.gtf E-Peve/code/00.01-E-Peve-sRNAseq-reads-FastQC-MultiQC.Rmd -> E-Peve/code/00.10-E-Peve-sRNAseq-reads-FastQC-MultiQC.Rmd E-Peve/code/00.10-E-Peve-BS-genome.Rmd -> E-Peve/code/00.21-E-Peve-BS-genome.Rmd E-Peve/code/00.10-E-Peve-BS-genome.html -> E-Peve/code/00.21-E-Peve-BS-genome.html E-Peve/code/00.10-E-Peve-BS-genome.md -> E-Peve/code/00.21-E-Peve-BS-genome.md E-Peve/code/04-bismark-array.sh -> E-Peve/code/04-bismark-array.job E-Peve/data/Porites_evermanni_validated.gff -> E-Peve/data/Porites_evermanni_validated.gff3 E-Peve/output/13-Peve-lncRNA-matrix/Apul_lncRNA_counts_filtered.txt -> E-Peve/output/13-Peve-lncRNA-matrix/Peve_lncRNA_counts_filtered.txt M-multi-species/data/RNA-seq_MEDFORD_metadata.txt -> M-multi-species/data/RNA-seq_MEDFORD_metadata.mfd M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_02/20251015_122334/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_02/20251015_190158/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_02/20251015_122334/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_07/20251015_190507/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_02/20251015_122334/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_02/20251015_190158/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_02/20251015_122334/time_factors.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_02/20251015_190158/time_factors.npy M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_03/20251015_122414/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_03/20251015_190236/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_03/20251015_122414/time_factors.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_03/20251015_190236/time_factors.npy M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_04/20251015_122453/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_04/20251015_190313/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_06/20251015_122609/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_06/20251015_190429/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_06/20251015_122609/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_14/20251015_190947/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_07/20251015_122647/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_11/20251015_190744/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_07/20251015_122647/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_07/20251015_190507/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_08/20251015_122726/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_08/20251015_190547/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_08/20251015_122726/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_09/20251015_190625/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_08/20251015_122726/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_08/20251015_190547/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_09/20251015_122804/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_09/20251015_190625/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_09/20251015_122804/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_09/20251015_190625/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_10/20251015_122844/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_10/20251015_190704/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_10/20251015_122844/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_10/20251015_190704/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_11/20251015_122924/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_11/20251015_190744/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_12/20251015_123003/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_12/20251015_190824/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_12/20251015_123003/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_02/20251015_190158/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_12/20251015_123003/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_12/20251015_190824/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_13/20251015_123046/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_13/20251015_190905/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_13/20251015_123046/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_15/20251015_191029/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_13/20251015_123046/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_13/20251015_190905/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_14/20251015_123128/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_14/20251015_190947/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_14/20251015_123128/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_13/20251015_190905/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_14/20251015_123128/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_14/20251015_190947/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_15/20251015_123210/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_15/20251015_191029/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_122334/rank_comparison/rank_15/20251015_123210/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_15/20251015_191029/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_02/20251015_124008/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_05/20251015_190351/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_03/20251015_124045/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_10/20251015_190704/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_03/20251015_124045/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_03/20251015_190236/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_04/20251015_124122/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_04/20251015_190313/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_04/20251015_124122/time_factors.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_04/20251015_190313/time_factors.npy M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_05/20251015_124200/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_05/20251015_190351/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_05/20251015_124200/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_05/20251015_190351/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_06/20251015_124238/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_12/20251015_190824/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_06/20251015_124238/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_06/20251015_190429/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_07/20251015_124317/README.md -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_07/20251015_190507/README.md M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_07/20251015_124317/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_04/20251015_190313/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_08/20251015_124356/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_08/20251015_190547/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_11/20251015_124554/summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_11/20251015_190744/summary.json M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_13/20251015_124715/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_03/20251015_190236/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_comparison/rank_14/20251015_124757/reconstructed_tensor.npy -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_comparison/rank_06/20251015_190429/reconstructed_tensor.npy M-multi-species/output/13.00-multiomics-stdm/20251015_124007/rank_selection_summary.json -> M-multi-species/output/13.00-multiomics-stdm/20251015_190157/rank_selection_summary.json M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_black.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_black.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_black_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_black_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_blue.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_blue.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_blue_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_blue_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_brown.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_brown.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_brown_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_brown_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_cyan.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_cyan.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_cyan_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_cyan_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_green.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_green.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_green_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_green_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_greenyellow.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_greenyellow.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_greenyellow_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_greenyellow_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_magenta.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_magenta.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_magenta_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_magenta_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_pink.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_pink.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_pink_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_pink_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_purple.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_purple.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_purple_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_purple_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_red.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_red.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_red_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_red_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_salmon.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_salmon.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_salmon_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_salmon_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_tan.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_tan.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_tan_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_tan_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_turquoise.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_turquoise.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_turquoise_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_turquoise_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_yellow.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_yellow.csv M-multi-species/output/31-module_contribution_WGCNA/MM/moduleMembership_yellow_topTenPct.csv -> M-multi-species/output/32-module_contribution_WGCNA/MM/moduleMembership_yellow_topTenPct.csv M-multi-species/output/31-module_contribution_WGCNA/calcificationSig_MM.pdf -> M-multi-species/output/32-module_contribution_WGCNA/calcificationSig_MM.pdf M-multi-species/output/31-module_contribution_WGCNA/calcification_hubGenes_expression.pdf -> M-multi-species/output/32-module_contribution_WGCNA/calcification_hubGenes_expression.pdf M-multi-species/scripts/31-module_contribution_WGCNA.Rmd -> M-multi-species/scripts/32-module_contribution_WGCNA.Rmd data/Apulcra-genome.gff -> D-Apul/data/Apulcra-genome.gff D-Apul/data/Apulchra-genome.gff