```bash
# Load bash variables into memory
source .bashvars

# Copy genome FastA to ShortStack-compatible filename (ending with .fa)
cp ${genome_fasta_dir}/${genome_fasta_name} ${genome_fasta_dir}/${shortstack_genome_fasta_name}

# Confirm
ls -lh ${genome_fasta_dir}/${shortstack_genome_fasta_name}
```

```
-rw-r--r-- 1 shedurkin labmembers 360M Dec  1 08:46 /home/shared/8TB_HDD_02/shedurkin/deep-dive/F-Pmea/data/Pmea/Pocillopora_meandrina_HIv1.assembly.fa
```