Index of /v1_web/owlshell/bu-github/deep-dive-expression/D-Apul/code

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[ ]RNA-ACR-140.sorted.bam 2024-10-09 16:26 4.2G 
[TXT]11-Apul-sRNA-ShortSt..>2024-11-10 06:00 1.7M 
[TXT]17-Apul-miRNA-lncRNA..>2025-02-14 09:17 1.1M 
[TXT]27-Apul-pheno-annot...>2025-03-21 12:45 58K 
[ ]27-Apul-pheno-annot.md 2025-03-21 12:52 17K 
[DIR]27-Apul-pheno-annot_..>2025-03-21 12:52 -  
[ ]00.00-D-Apul-WGBS-re..>2025-06-22 17:39 7.3K 
[ ]00.00-D-Apul-WGBS-re..>2025-06-22 17:39 19K 
[TXT]01-Apul-RNA-trimming..>2025-06-22 17:39 8.5K 
[TXT]01-Apul-RNA-trimming..>2025-06-22 17:39 1.0M 
[ ]01-Apul-RNA-trimming..>2025-06-22 17:39 16K 
[ ]01.00-D-Apul-WGBS-tr..>2025-06-22 17:39 3.8K 
[TXT]01.00-D-Apul-WGBS-tr..>2025-06-22 17:39 3.6K 
[ ]01.00-D-Apul-WGBS-tr..>2025-06-22 17:39 6.5K 
[TXT]01.00-D-Apul-WGBS-tr..>2025-06-22 17:39 9.7K 
[TXT]02-Apul-reference-an..>2025-06-22 17:39 19K 
[TXT]02-Apul-reference-an..>2025-06-22 17:39 9.8M 
[DIR]02-Apul-reference-an..>2025-06-22 17:39 -  
[ ]03-Apul-RNA-summary.Rmd2025-06-22 17:39 16K 
[TXT]03-Apul-RNA-summary...>2025-06-22 17:39 1.8M 
[ ]03-Apul-RNA-summary.md 2025-06-22 17:39 28K 
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[ ]03.01-Apul-RNA-summa..>2025-06-22 17:39 16K 
[ ]03.01-Apul-RNA-summa..>2025-06-22 17:39 22K 
[DIR]03.01-Apul-RNA-summa..>2025-06-22 17:39 -  
[ ]03.1-Apul-sRNA-summa..>2025-06-22 17:39 31K 
[TXT]03.1-Apul-sRNA-summa..>2025-06-22 17:39 3.8M 
[ ]03.1-Apul-sRNA-summa..>2025-06-22 17:39 39K 
[DIR]03.1-Apul-sRNA-summa..>2025-06-22 17:39 -  
[ ]03.2-Apul-lncRNA-sum..>2025-06-22 17:39 13K 
[ ]03.2-Apul-lncRNA-sum..>2025-06-22 17:39 18K 
[DIR]03.2-Apul-lncRNA-sum..>2025-06-22 17:39 -  
[ ]04-Apul-RNA-sRNA-WGC..>2025-06-22 17:39 8.3K 
[TXT]04-Apul-RNA-sRNA-WGC..>2025-06-22 17:39 1.8M 
[ ]04-Apul-RNA-sRNA-WGC..>2025-06-22 17:39 26K 
[DIR]04-Apul-RNA-sRNA-WGC..>2025-06-22 17:39 -  
[ ]05-Apul-mixOmics.Rmd 2025-06-22 17:39 4.5K 
[TXT]07-Apul-Hisat.qmd 2025-06-22 17:39 8.9K 
[TXT]08-Apul-WGBS.Rmd 2025-06-22 17:39 34K 
[TXT]08-Apul-WGBS.md 2025-06-22 17:39 44K 
[DIR]08-Apul-WGBS_files/ 2025-06-22 17:39 -  
[TXT]09-Apul-mRNA-miRNA-i..>2025-06-22 17:39 21K 
[TXT]09-Apul-mRNA-miRNA-i..>2025-06-22 17:39 74K 
[DIR]09-Apul-mRNA-miRNA-i..>2025-06-22 17:39 -  
[TXT]09.01-Apul-mRNA-miRN..>2025-06-22 17:39 12K 
[ ]09.01-Apul-mRNA-miRN..>2025-06-22 17:39 16K 
[ ]09.1-Apul-mRNA-miRNA..>2025-06-22 17:39 34K 
[ ]09.1-Apul-mRNA-miRNA..>2025-06-22 17:39 252K 
[DIR]09.1-Apul-mRNA-miRNA..>2025-06-22 17:39 -  
[TXT]10-Apul-lncRNA.qmd 2025-06-22 17:39 8.9K 
[TXT]10.1-Apul-lncRNA.qmd 2025-06-22 17:39 8.5K 
[ ]11-Apul-sRNA-ShortSt..>2025-06-22 17:39 16K 
[ ]11-Apul-sRNA-ShortSt..>2025-06-22 17:39 27K 
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[TXT]11.1-Apul-sRNA-Short..>2025-06-22 17:39 4.1K 
[TXT]12-Apul-genome-explo..>2025-06-22 17:39 5.3K 
[ ]12-Apul-genome-explo..>2025-06-22 17:39 1.1K 
[ ]13-Apul-miRNA-naming..>2025-06-22 17:39 697  
[TXT]14-Apul-RepeatMasker..>2025-06-22 17:39 4.3K 
[TXT]15-Apul-annotate-UTR..>2025-06-22 17:39 8.6K 
[TXT]15-Apul-annotate-UTR..>2025-06-22 17:39 1.0M 
[TXT]15-Apul-annotate-UTR..>2025-06-22 17:39 13K 
[TXT]16-Apul-RNAhybrid.Rmd 2025-06-22 17:39 19K 
[TXT]16-Apul-RNAhybrid.html 2025-06-22 17:39 1.4M 
[TXT]16-Apul-RNAhybrid.md 2025-06-22 17:39 23K 
[DIR]16-Apul-RNAhybrid_fi..>2025-06-22 17:39 -  
[TXT]17-Apul-miRNA-lncRNA..>2025-06-22 17:39 31K 
[TXT]17-Apul-miRNA-lncRNA..>2025-06-22 17:39 106K 
[DIR]17-Apul-miRNA-lncRNA..>2025-06-22 17:39 -  
[TXT]18-Apul-interactions..>2025-06-22 17:39 6.4K 
[TXT]18-Apul-interactions..>2025-06-22 17:39 1.1M 
[TXT]18-Apul-interactions..>2025-06-22 17:39 31K 
[TXT]19-Apul-lncRNA-matri..>2025-06-22 17:39 1.3K 
[ ]20-Apul-Orthofinder.Rmd2025-06-22 17:39 10K 
[TXT]20-Apul-Orthofinder.md 2025-06-22 17:39 13K 
[ ]21-Apul-mRNA-lncRNA-..>2025-06-22 17:39 12K 
[ ]21-Apul-mRNA-lncRNA-..>2025-06-22 17:39 35K 
[DIR]21-Apul-mRNA-lncRNA-..>2025-06-22 17:39 -  
[TXT]22-Apul-methylation.qmd2025-06-22 17:39 5.8K 
[TXT]22.2-Apul-methylatio..>2025-06-22 17:39 5.8K 
[TXT]22.3-Apul-methylatio..>2025-06-22 17:39 5.8K 
[TXT]23-Apul-miRNA-methyl..>2025-06-22 17:39 5.4K 
[TXT]23-Apul-miRNA-methyl..>2025-06-22 17:39 7.7K 
[TXT]24-Apul-miRanda-inpu..>2025-06-22 17:39 21K 
[ ]24-Apul-miRanda-inpu..>2025-06-22 17:39 28K 
[DIR]24-Apul-miRanda-inpu..>2025-06-22 17:39 -  
[TXT]7.2-Apul-Hisat.qmd 2025-06-22 17:39 5.4K 
[TXT]25-lncRNA-pipeline.qmd 2025-06-22 17:39 10K 
[TXT]26-Apul-siRNA-mRNA-i..>2025-06-22 17:39 20K 
[ ]26-Apul-siRNA-mRNA-i..>2025-06-22 17:39 16K 
[TXT]27-Apul-pheno-annot.qmd2025-06-22 17:39 8.2K 
[TXT]28-Apul-miRNA-lncRNA..>2025-06-22 17:39 11K 
[TXT]28-Apul-miRNA-lncRNA..>2025-06-22 17:39 13K 
[DIR]28-Apul-miRNA-lncRNA..>2025-06-22 17:39 -  
[TXT]29-Apul-mRNA-GO-enri..>2025-06-22 17:39 11K 
[TXT]30.00-Apul-transcrip..>2025-06-22 17:39 14K 
[ ]30.00-Apul-transcrip..>2025-06-22 17:39 53K 
[ ]genome-stats.sh 2025-06-22 17:39 1.9K 
[ ]references.bib 2025-06-22 17:39 2.7K 
[TXT]siRNA-reads-to-genom..>2025-06-22 17:39 0  
[ ]31-Apul-lncRNA.Rmd 2025-06-23 11:06 14K 
[TXT]32-Apul-lncRNA-matri..>2025-06-23 11:15 1.6K 
[TXT]33-Apul-Amil-lncRNA-..>2025-07-19 08:45 708