Chat History - October 1, 2025 SCTransform Normalization Troubleshooting Session This file was created to store the chat history from the sctransform notebook troubleshooting session. To complete this export, please: 1. Select all the text from the chat panel in VS Code 2. Copy it (Ctrl+C or Cmd+C) 3. Paste it below this header in this file 4. Save the file Session Summary: - Worked on 2-normalize-sctransform.ipynb notebook - Encountered rpy2 installation and compatibility issues - Fixed Matrix package version conflicts - Attempted sctransform version compatibility fixes - Successfully installed required packages and dependencies --- [Paste your full chat history below this line]