PLINK v1.90b7 64-bit (16 Jan 2023)
Options in effect:
  --allow-extra-chr
  --bfile output/merged
  --out pca
  --pca

Hostname: raven
Working directory: /home/shared/16TB_HDD_01/sr320/github/Karina-chinook-v2/project
Start time: Sun May 11 07:43:39 2025

Random number seed: 1746974619
253367 MB RAM detected; reserving 126683 MB for main workspace.
112138 variants loaded from .bim file.
10 people (0 males, 0 females, 10 ambiguous) loaded from .fam.
Ambiguous sex IDs written to pca.nosex .
Using up to 47 threads (change this with --threads).
Before main variant filters, 10 founders and 0 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate is 0.280995.
112138 variants and 10 people pass filters and QC.
Note: No phenotypes present.
Relationship matrix calculation complete.
Warning: calculating 10 PCs, since there are only 10 samples.
--pca: Results saved to pca.eigenval and pca.eigenvec .

End time: Sun May 11 07:43:40 2025