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"GC":[0.678435,0.52371,0.423597,0.444808,0.400305,0.408265,0.33778,0.410281,0.467718,0.345909,0.494149,0.484421,0.426291,0.415021,0.416708,0.425048,0.435873,0.421004,0.436757,0.419487,0.437091,0.4224,0.427446,0.427038,0.4275,0.431152,0.433045,0.42323,0.438172,0.420802,0.434154,0.421509,0.433414,0.424439,0.436195,0.431843,0.435276,0.431956,0.429336,0.420836,0.429959,0.428973,0.428668,0.423701,0.425776,0.432144,0.430943,0.427106,0.436793,0.429767,0.431882,0.423244,0.435799,0.431654,0.435827,0.432259,0.436305,0.433333,0.438367,0.430333,0.438466,0.432171,0.437946,0.434199,0.440487,0.430889,0.441494,0.434714,0.437613,0.431437,0.439343,0.433833,0.439952,0.437764,0.44074,0.438838,0.443867,0.437878,0.444845,0.439711,0.443548,0.438111,0.443248,0.438935,0.444137,0.441463,0.44509,0.443331,0.450476,0.442704,0.450604,0.445791,0.449203,0.448356,0.451161,0.448336,0.452429,0.450424,0.454177,0.450501,0.460186] }, "kmer_count": { "AAAAA":9402724, "AAAAT":6165950, "AAAAC":4294082, "AAAAG":5494143, 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"ACGTT":1118366, "ACGTC":3423129, "ACGTG":1025220, "ACGCA":676132, "ACGCT":571331, "ACGCC":348340, "ACGCG":192863, "ACGGA":1066702, "ACGGT":836053, "ACGGC":503215, "ACGGG":935987, "AGAAA":8679563, "AGAAT":4158798, "AGAAC":3348864, "AGAAG":6761838, "AGATA":5159584, "AGATT":2670500, "AGATC":6368381, "AGATG":5657919, "AGACA":7716830, "AGACT":2700863, "AGACC":1495977, "AGACG":1322283, "AGAGA":37007072, "AGAGT":5572774, "AGAGC":7295345, "AGAGG":11838966, "AGTAA":3987366, "AGTAT":3674084, "AGTAC":2096733, "AGTAG":6494865, "AGTTA":2999622, "AGTTT":2962915, "AGTTC":1627085, "AGTTG":2757928, "AGTCA":4768802, "AGTCT":2296549, "AGTCC":1356772, "AGTCG":626382, "AGTGA":5706753, "AGTGT":6109671, "AGTGC":1734691, "AGTGG":4866380, "AGCAA":2582971, "AGCAT":2542813, "AGCAC":5099621, "AGCAG":4215594, "AGCTA":2134822, "AGCTT":1748350, "AGCTC":1438386, "AGCTG":2910248, "AGCCA":1996363, "AGCCT":1765768, "AGCCC":768013, "AGCCG":639322, "AGCGA":1714212, "AGCGT":958002, "AGCGC":561352, "AGCGG":857123, "AGGAA":5682235, "AGGAT":3710456, "AGGAC":2832742, "AGGAG":9947698, "AGGTA":4181135, "AGGTT":2955095, "AGGTC":1678455, "AGGTG":4226979, "AGGCA":2695641, "AGGCT":2363381, "AGGCC":1421069, "AGGCG":715474, "AGGGA":7507504, "AGGGT":4748233, "AGGGC":1934706, "AGGGG":6464572, "TAAAA":5512224, "TAAAT":4573736, "TAAAC":2710159, "TAAAG":3912785, "TAATA":3851627, "TAATT":2819739, "TAATC":1599299, "TAATG":4403307, "TAACA":3793635, "TAACT":2109004, "TAACC":1185475, "TAACG":798930, "TAAGA":2824500, "TAAGT":2078170, "TAAGC":1019557, "TAAGG":2573021, "TATAA":3497403, "TATAT":5348160, "TATAC":2672936, "TATAG":4240765, "TATTA":3418691, "TATTT":4682405, "TATTC":1987539, "TATTG":3226005, "TATCA":2219713, "TATCT":1817830, "TATCC":1003334, "TATCG":611686, "TATGA":4133352, "TATGT":4756444, "TATGC":1448461, "TATGG":3381230, "TACAA":2960712, "TACAT":3519048, "TACAC":2177166, "TACAG":5115562, "TACTA":1721060, "TACTT":1991883, "TACTC":1163928, "TACTG":3305449, "TACCA":1546893, "TACCT":1528853, "TACCC":758450, "TACCG":522321, "TACGA":631141, "TACGT":742347, "TACGC":314264, "TACGG":689026, "TAGAA":3884425, "TAGAT":4462977, "TAGAC":2106439, "TAGAG":6792383, "TAGTA":5007505, "TAGTT":2767293, "TAGTC":1862036, "TAGTG":4762731, "TAGCA":2310901, "TAGCT":1908793, "TAGCC":1354643, "TAGCG":727550, "TAGGA":3222026, "TAGGT":2410436, "TAGGC":1458423, "TAGGG":4173721, "TTAAA":4621879, "TTAAT":3656389, "TTAAC":2046918, "TTAAG":2107629, "TTATA":3307638, "TTATT":4189794, "TTATC":1473730, "TTATG":3005635, "TTACA":3474809, "TTACT":2096748, "TTACC":1125034, "TTACG":561859, "TTAGA":3115646, "TTAGT":2677190, "TTAGC":1402119, "TTAGG":2594920, "TTTAA":4010839, "TTTAT":3891957, "TTTAC":2437919, "TTTAG":2809609, "TTTTA":4084347, "TTTTT":6523520, "TTTTC":2599420, "TTTTG":3735778, "TTTCA":3242406, "TTTCT":3106815, "TTTCC":1882953, "TTTCG":607194, "TTTGA":3594648, "TTTGT":4214938, "TTTGC":1824223, "TTTGG":3222458, "TTCAA":3005923, "TTCAT":2810197, "TTCAC":1764133, "TTCAG":2801527, "TTCTA":2239742, "TTCTT":2337570, 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"CATCA":2624434, "CATCT":2084560, "CATCC":1195943, "CATCG":602623, "CATGA":2605408, "CATGT":3423583, "CATGC":1522918, "CATGG":2734999, "CACAA":2903911, "CACAT":2494183, "CACAC":7386012, "CACAG":3495478, "CACTA":1717563, "CACTT":1702146, "CACTC":2577147, "CACTG":2585309, "CACCA":1855942, "CACCT":1331453, "CACCC":793899, "CACCG":554847, "CACGA":646606, "CACGT":3653081, "CACGC":489523, "CACGG":646931, "CAGAA":4184446, "CAGAT":4239401, "CAGAC":3297574, "CAGAG":7690866, "CAGTA":4601286, "CAGTT":2584722, "CAGTC":3665968, "CAGTG":4340298, "CAGCA":3064768, "CAGCT":2377522, "CAGCC":1411516, "CAGCG":925597, "CAGGA":3544022, "CAGGT":2985774, "CAGGC":1535381, "CAGGG":3521403, "CTAAA":2426479, "CTAAT":1695525, "CTAAC":1352106, "CTAAG":1195500, "CTATA":2651920, "CTATT":1959234, "CTATC":948866, "CTATG":2944261, "CTACA":2372917, "CTACT":1483635, "CTACC":865411, "CTACG":566057, "CTAGA":1988497, "CTAGT":2197872, "CTAGC":1123651, "CTAGG":1522040, "CTTAA":1456955, "CTTAT":1470897, "CTTAC":948323, 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"GC":[0.431046,0.433063,0.424625,0.431716,0.425186,0.433617,0.430283,0.433121,0.423709,0.431754,0.425996,0.428393,0.427235,0.432453,0.422788,0.430634,0.422759,0.429418,0.426064,0.430233,0.423295,0.431486,0.424264,0.429587,0.425284,0.431518,0.421867,0.432903,0.424376,0.429668,0.425735,0.42943,0.423086,0.433348,0.424249,0.428539,0.424562,0.429509,0.422797,0.431069,0.424035,0.428641,0.422539,0.429976,0.420584,0.430574,0.421749,0.427346,0.424197,0.428619,0.421295,0.43,0.421837,0.426517,0.424227,0.428868,0.420905,0.428416,0.41946,0.425534,0.423864,0.428,0.419177,0.427513,0.420538,0.427372,0.420727,0.426823,0.419198,0.426579,0.421044,0.425069,0.421661,0.426064,0.418182,0.430035,0.420588,0.425366,0.421773,0.426474,0.420476,0.428382,0.419532,0.42424,0.421771,0.426691] }, "kmer_count": { "AAAAA":5182836, "AAAAT":3820022, "AAAAC":2952445, "AAAAG":2134131, "AAATA":4000834, "AAATT":2321869, "AAATC":2202655, "AAATG":3291749, "AAACA":4514221, "AAACT":2510005, "AAACC":2293856, "AAACG":826579, 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"TGCTC":2152730, "TGCTG":2467674, "TGCCA":2028383, "TGCCT":2132868, "TGCCC":1490152, "TGCCG":530068, "TGCGA":365772, "TGCGT":572647, "TGCGC":410269, "TGCGG":295124, "TGGAA":1928708, "TGGAT":1471805, "TGGAC":1556693, "TGGAG":1571248, "TGGTA":1332621, "TGGTT":1837767, "TGGTC":1560088, "TGGTG":1632091, "TGGCA":1525151, "TGGCT":1709773, "TGGCC":1355700, "TGGCG":369798, "TGGGA":1186754, "TGGGT":1106312, "TGGGC":779833, "TGGGG":769392, "CAAAA":3157639, "CAAAT":2782342, "CAAAC":2864466, "CAAAG":1850174, "CAATA":2664331, "CAATT":2198720, "CAATC":1938395, "CAATG":2315073, "CAACA":4197383, "CAACT":2255887, "CAACC":2581742, "CAACG":770646, "CAAGA":1651825, "CAAGT":1464426, "CAAGC":1327828, "CAAGG":1315769, "CATAA":2393615, "CATAT":3014196, "CATAC":3204794, "CATAG":1685435, "CATTA":3662163, "CATTT":4484404, "CATTC":3097923, "CATTG":2455993, "CATCA":3861386, "CATCT":4336131, "CATCC":3310020, "CATCG":830687, "CATGA":2121565, "CATGT":3094611, "CATGC":1821245, "CATGG":1671100, "CACAA":3444149, "CACAT":4375948, "CACAC":11122767, "CACAG":3504531, "CACTA":3897875, "CACTT":2707374, "CACTC":4538903, "CACTG":3590164, "CACCA":4396141, "CACCT":3281477, "CACCC":2915590, "CACCG":782242, "CACGA":575655, "CACGT":827459, "CACGC":929991, "CACGG":569524, "CAGAA":2413332, "CAGAT":2049250, "CAGAC":2801570, "CAGAG":2308352, "CAGTA":2724519, "CAGTT":2333683, "CAGTC":2824486, "CAGTG":2212585, "CAGCA":2854806, "CAGCT":2440430, "CAGCC":2386897, "CAGCG":619844, "CAGGA":1796495, "CAGGT":1693031, "CAGGC":1439331, "CAGGG":1157263, "CTAAA":2248792, "CTAAT":2040920, "CTAAC":2809738, "CTAAG":786364, "CTATA":3423061, "CTATT":2987793, "CTATC":3644193, "CTATG":1785793, "CTACA":4190774, "CTACT":4947876, "CTACC":3671213, "CTACG":615252, "CTAGA":1385423, "CTAGT":1677981, "CTAGC":1475681, "CTAGG":1014845, "CTTAA":1709014, "CTTAT":2150524, "CTTAC":1893843, "CTTAG":963152, "CTTTA":3082246, "CTTTT":3808307, "CTTTC":4749228, "CTTTG":2533144, "CTTCA":3282720, "CTTCT":4847569, "CTTCC":3473869, "CTTCG":555537, "CTTGA":1529608, "CTTGT":2017727, "CTTGC":1241317, "CTTGG":959598, "CTCAA":2527336, "CTCAT":3344178, "CTCAC":4401451, "CTCAG":2298801, "CTCTA":5233255, "CTCTT":5854609, "CTCTC":24528370, "CTCTG":5849515, "CTCCA":4748679, "CTCCT":7064445, "CTCCC":5130739, "CTCCG":838032, "CTCGA":470592, "CTCGT":831268, "CTCGC":1139911, "CTCGG":441735, "CTGAA":2330072, "CTGAT":2231502, "CTGAC":2823988, "CTGAG":1692779, "CTGTA":4045126, "CTGTT":4522059, "CTGTC":6142332, "CTGTG":2904093, "CTGCA":2504799, "CTGCT":3232838, "CTGCC":2368475, "CTGCG":495511, "CTGGA":1779268, "CTGGT":1818602, "CTGGC":1465882, "CTGGG":1105943, "CCAAA":2595169, "CCAAT":2089339, "CCAAC":2557020, "CCAAG":1444091, "CCATA":2651547, "CCATT":3144308, "CCATC":4116918, "CCATG":2277725, "CCACA":4069472, "CCACT":3849381, "CCACC":3602328, "CCACG":815316, "CCAGA":2255648, "CCAGT":2428809, "CCAGC":2052158, "CCAGG":1607235, "CCTAA":2044427, "CCTAT":2296139, "CCTAC":3157470, "CCTAG":1249790, "CCTTA":1974842, "CCTTT":3394022, "CCTTC":3666632, "CCTTG":1577473, "CCTCA":3484060, "CCTCT":8374294, "CCTCC":5765132, "CCTCG":758752, "CCTGA":2039078, "CCTGT":3455133, "CCTGC":2082404, "CCTGG":1645214, "CCCAA":2193995, "CCCAT":2682009, "CCCAC":3075601, "CCCAG":2368925, "CCCTA":3125501, "CCCTT":2818451, "CCCTC":5848682, "CCCTG":2708629, "CCCCA":3159664, "CCCCT":4010315, "CCCCC":3026693, "CCCCG":819003, "CCCGA":439974, "CCCGT":707164, "CCCGC":587279, "CCCGG":460794, "CCGAA":387394, "CCGAT":530786, "CCGAC":538080, "CCGAG":454551, "CCGTA":554112, "CCGTT":705180, "CCGTC":859953, "CCGTG":526760, "CCGCA":497058, "CCGCT":684452, "CCGCC":714077, "CCGCG":173138, "CCGGA":372565, "CCGGT":480823, "CCGGC":426107, "CCGGG":379485, "CGAAA":489532, "CGAAT":412544, "CGAAC":410762, "CGAAG":317233, "CGATA":489147, "CGATT":507373, "CGATC":472075, "CGATG":515091, "CGACA":709269, "CGACT":528725, "CGACC":615581, "CGACG":233663, "CGAGA":568823, "CGAGT":350059, "CGAGC":351794, "CGAGG":391549, "CGTAA":463334, "CGTAT":506772, "CGTAC":510162, "CGTAG":478726, "CGTTA":695091, "CGTTT":986527, "CGTTC":781944, "CGTTG":643149, "CGTCA":795646, "CGTCT":1031465, "CGTCC":681190, "CGTCG":222672, "CGTGA":456671, "CGTGT":763593, "CGTGC":455035, "CGTGG":430947, "CGCAA":491742, "CGCAT":477861, "CGCAC":663499, "CGCAG":510528, "CGCTA":594095, "CGCTT":535060, "CGCTC":1343966, "CGCTG":786731, "CGCCA":658890, "CGCCT":594542, "CGCCC":767244, "CGCCG":231530, "CGCGA":129218, "CGCGT":159561, "CGCGC":244841, "CGCGG":147399, "CGGAA":526138, "CGGAT":332778, "CGGAC":414121, "CGGAG":476810, "CGGTA":465020, "CGGTT":427904, "CGGTC":464729, "CGGTG":483788, "CGGCA":454430, "CGGCT":494010, "CGGCC":486088, "CGGCG":205462, "CGGGA":360472, "CGGGT":262928, "CGGGC":284356, "CGGGG":311072, "GAAAA":2308553, "GAAAT":2150876, "GAAAC":1825221, "GAAAG":1390957, "GAATA":1659062, "GAATT":1483047, "GAATC":1084275, "GAATG":1573176, "GAACA":2189587, "GAACT":1366021, "GAACC":1245200, "GAACG":559202, "GAAGA":1629377, "GAAGT":1280264, "GAAGC":967404, "GAAGG":1063819, "GATAA":1275028, "GATAT":1586089, "GATAC":1138717, "GATAG":846957, "GATTA":1364068, "GATTT":2065123, "GATTC":1174486, "GATTG":1247513, "GATCA":1392763, "GATCT":1443399, "GATCC":991949, "GATCG":518675, "GATGA":1666845, "GATGT":1840956, "GATGC":1072142, "GATGG":1118706, "GACAA":1943697, "GACAT":2277301, "GACAC":2312938, "GACAG":2107811, "GACTA":1503088, "GACTT":1415266, "GACTC":1532880, "GACTG":1831545, "GACCA":1982503, "GACCT":1403995, "GACCC":1512280, "GACCG":395829, "GACGA":574072, "GACGT":532613, "GACGC":417260, "GACGG":422483, "GAGAA":1780077, "GAGAT":1370734, "GAGAC":1559683, "GAGAG":2158591, "GAGTA":1007792, "GAGTT":1152510, "GAGTC":939719, "GAGTG":1152908, "GAGCA":1238443, "GAGCT":1206313, "GAGCC":1046204, "GAGCG":424182, "GAGGA":1498194, "GAGGT":1017245, "GAGGC":881480, "GAGGG":808308, "GTAAA":2079441, "GTAAT":1799241, "GTAAC":1459040, "GTAAG":823577, "GTATA":2143128, "GTATT":2426659, "GTATC":1452056, "GTATG":1473857, "GTACA":2179494, "GTACT":1644565, "GTACC":1394541, "GTACG":385215, "GTAGA":1339435, "GTAGT":1316415, "GTAGC":1100804, "GTAGG":824227, "GTTAA":1715025, "GTTAT":2013257, "GTTAC":1663463, "GTTAG":1133550, "GTTTA":2218317, "GTTTT":3440865, "GTTTC":2363932, "GTTTG":2163465, "GTTCA":1993569, "GTTCT":2750241, "GTTCC":1637582, "GTTCG":331194, "GTTGA":1675206, "GTTGT":2325492, "GTTGC":1148546, "GTTGG":1040166, "GTCAA":1690327, "GTCAT":2269310, "GTCAC":2039018, "GTCAG":1767949, "GTCTA":1756973, "GTCTT":2136668, "GTCTC":3950859, "GTCTG":2795751, "GTCCA":1846188, "GTCCT":2226404, "GTCCC":1804827, "GTCCG":361975, "GTCGA":353177, "GTCGT":508400, "GTCGC":381314, "GTCGG":322385, "GTGAA":1545135, "GTGAT":1376907, "GTGAC":1294174, "GTGAG":1012788, "GTGTA":1831442, "GTGTT":2760208, "GTGTC":1836342, "GTGTG":3525904, "GTGCA":1399546, "GTGCT":1379888, "GTGCC":1032684, "GTGCG":370119, "GTGGA":1282133, "GTGGT":1293620, "GTGGC":941712, "GTGGG":774573, "GCAAA":1506471, "GCAAT":1267685, "GCAAC":1265743, "GCAAG":928318, "GCATA":1207738, "GCATT":1783148, "GCATC":1393120, "GCATG":1305460, "GCACA":2047935, "GCACT":1456594, "GCACC":1299974, "GCACG":426551, "GCAGA":1475942, "GCAGT":1407515, "GCAGC":1574669, "GCAGG":1141621, "GCTAA":1216270, "GCTAT":1443458, "GCTAC":1633347, "GCTAG":972343, "GCTTA":819049, "GCTTT":2091412, "GCTTC":1491918, "GCTTG":940086, "GCTCA":1492126, "GCTCT":2792112, "GCTCC":1561873, "GCTCG":412198, "GCTGA":1474876, "GCTGT":2301532, "GCTGC":1648136, "GCTGG":1142900, "GCCAA":1471873, "GCCAT":1811934, "GCCAC":1601031, "GCCAG":1296557, "GCCTA":1182748, "GCCTT":1578947, "GCCTC":1817570, "GCCTG":1308275, "GCCCA":1481609, "GCCCT":1589488, "GCCCC":1397981, "GCCCG":345269, "GCCGA":387138, "GCCGT":413641, "GCCGC":421875, "GCCGG":345828, "GCGAA":313919, "GCGAT":296768, "GCGAC":321528, "GCGAG":292828, "GCGTA":268815, "GCGTT":474109, "GCGTC":398842, "GCGTG":413791, "GCGCA":375753, "GCGCT":479857, "GCGCC":344206, "GCGCG":166660, "GCGGA":245194, "GCGGT":321698, "GCGGC":303285, "GCGGG":228907, "GGAAA":1670826, "GGAAT":1210110, "GGAAC":1079969, "GGAAG":1107911, "GGATA":881834, "GGATT":1135240, "GGATC":865354, "GGATG":1053023, "GGACA":1659402, "GGACT":1154691, "GGACC":944959, "GGACG":381714, "GGAGA":1519950, "GGAGT":963087, "GGAGC":897218, "GGAGG":1121163, "GGTAA":1019456, "GGTAT":1076184, "GGTAC":941315, "GGTAG":755363, "GGTTA":1031790, "GGTTT":1492274, "GGTTC":864046, "GGTTG":971164, "GGTCA":1368129, "GGTCT":1284883, "GGTCC":861932, "GGTCG":281755, "GGTGA":1025059, "GGTGT":1435993, "GGTGC":738263, "GGTGG":894032, "GGCAA":933814, "GGCAT":1029381, "GGCAC":908734, "GGCAG":1101040, "GGCTA":1134019, "GGCTT":1028908, "GGCTC":1044478, "GGCTG":1267066, "GGCCA":1305185, "GGCCT":1209259, "GGCCC":883160, "GGCCG":346844, "GGCGA":314869, "GGCGT":291074, "GGCGC":297992, "GGCGG":315625, "GGGAA":960854, "GGGAT":792709, "GGGAC":754058, "GGGAG":832575, "GGGTA":690660, "GGGTT":801369, "GGGTC":616752, "GGGTG":749343, "GGGCA":682845, "GGGCT":681203, "GGGCC":685929, "GGGCG":231946, "GGGGA":679765, "GGGGT":608932, "GGGGC":466503, "GGGGG":732786 }, "overrepresented_sequences": { } }, "command": "fastp --in1 lib_213556_sample_1703731_S34_L001_R1_001.fastq.gz --in2 lib_213556_sample_1703731_S34_L001_R2_001.fastq.gz --detect_adapter_for_pe --trim_poly_g --trim_poly_x --trim_front1 15 --trim_front2 15 --thread 50 --html /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213556_sample_1703731_S34_L001.fastp-trim.report.html --json /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213556_sample_1703731_S34_L001.fastp-trim.report.json --out1 /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213556_sample_1703731_S34_L001_R1_001.fastp-trim.fq.gz --out2 /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213556_sample_1703731_S34_L001_R2_001.fastp-trim.fq.gz " }