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"GC":[0.674478,0.509713,0.422592,0.427977,0.386402,0.369791,0.308099,0.390323,0.437413,0.340186,0.469996,0.462958,0.403375,0.398273,0.396348,0.398921,0.410739,0.404521,0.407943,0.407012,0.410836,0.404335,0.40894,0.404093,0.408949,0.407383,0.407842,0.404613,0.413801,0.404075,0.40973,0.40476,0.408891,0.4078,0.413883,0.405232,0.409428,0.411397,0.412051,0.411688,0.413837,0.405949,0.414055,0.410945,0.408954,0.41238,0.414246,0.408098,0.415059,0.410488,0.412659,0.411725,0.418344,0.414102,0.418324,0.41384,0.410425,0.413355,0.415064,0.408046,0.415848,0.412655,0.414248,0.415125,0.417251,0.411198,0.417702,0.417636,0.413182,0.416335,0.419412,0.413993,0.4198,0.417422,0.418524,0.4189,0.423329,0.419192,0.422198,0.420562,0.421271,0.421698,0.424876,0.418861,0.423542,0.4252,0.424618,0.423785,0.428677,0.422353,0.426808,0.426385,0.426496,0.428226,0.431884,0.428612,0.43341,0.432345,0.431696,0.433919,0.437728] }, "kmer_count": { "AAAAA":19319828, "AAAAT":8526991, "AAAAC":6219307, "AAAAG":8197904, 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"ACGTT":1272375, "ACGTC":3337337, "ACGTG":1034658, "ACGCA":1913175, "ACGCT":811168, "ACGCC":538804, "ACGCG":323050, "ACGGA":1015217, "ACGGT":821369, "ACGGC":900663, "ACGGG":827265, "AGAAA":7709809, "AGAAT":3299688, "AGAAC":2501707, "AGAAG":5861176, "AGATA":3169307, "AGATT":2843140, "AGATC":5941336, "AGATG":3923690, "AGACA":3908978, "AGACT":2210742, "AGACC":1157119, "AGACG":1390223, "AGAGA":7680452, "AGAGT":3213387, "AGAGC":5880372, "AGAGG":5032865, "AGTAA":3210074, "AGTAT":2669344, "AGTAC":1866164, "AGTAG":3223349, "AGTTA":2681942, "AGTTT":3719540, "AGTTC":1611466, "AGTTG":3399271, "AGTCA":4119964, "AGTCT":2088701, "AGTCC":1505078, "AGTCG":922238, "AGTGA":4366118, "AGTGT":4308007, "AGTGC":2001797, "AGTGG":2869089, "AGCAA":3107627, "AGCAT":2558336, "AGCAC":5130741, "AGCAG":4221849, "AGCTA":1582703, "AGCTT":2519772, "AGCTC":1798614, "AGCTG":3471173, "AGCCA":2041535, "AGCCT":1528785, "AGCCC":1018253, "AGCCG":837823, "AGCGA":1187716, "AGCGT":1126106, "AGCGC":664414, "AGCGG":1152892, "AGGAA":4847263, "AGGAT":3370679, "AGGAC":2444670, "AGGAG":5484650, "AGGTA":2028741, "AGGTT":2687120, "AGGTC":1617247, "AGGTG":2918557, "AGGCA":2402525, "AGGCT":1928596, "AGGCC":1264480, "AGGCG":971804, "AGGGA":3111080, "AGGGT":2524561, "AGGGC":1507389, "AGGGG":3211356, "TAAAA":8543323, "TAAAT":5669026, "TAAAC":3321345, "TAAAG":4211234, "TAATA":4139691, "TAATT":3282728, "TAATC":1731418, "TAATG":3780598, "TAACA":3457108, "TAACT":2076359, "TAACC":997602, "TAACG":794169, "TAAGA":2992230, "TAAGT":2259247, "TAAGC":1264807, "TAAGG":2041108, "TATAA":3639629, "TATAT":4726334, "TATAC":1798069, "TATAG":1908052, "TATTA":3721185, "TATTT":5873347, "TATTC":1981492, "TATTG":2846839, "TATCA":2249406, "TATCT":1937197, "TATCC":1058992, "TATCG":620342, "TATGA":2683458, "TATGT":3852385, "TATGC":1733816, "TATGG":1745482, "TACAA":3682341, "TACAT":3233650, "TACAC":1940158, "TACAG":3161425, "TACTA":1489095, "TACTT":2291400, "TACTC":1164122, "TACTG":2642083, "TACCA":1312063, "TACCT":979312, "TACCC":536522, "TACCG":479276, "TACGA":711837, "TACGT":823148, "TACGC":389083, "TACGG":509142, "TAGAA":3130556, "TAGAT":2996068, "TAGAC":1204795, "TAGAG":2503445, "TAGTA":2810484, "TAGTT":2786839, "TAGTC":1259184, "TAGTG":2697310, "TAGCA":1896286, "TAGCT":1531413, "TAGCC":824400, "TAGCG":567090, "TAGGA":1980175, "TAGGT":1174605, "TAGGC":849335, "TAGGG":1474934, "TTAAA":7059902, "TTAAT":4063387, "TTAAC":2528203, "TTAAG":2937830, "TTATA":3247761, "TTATT":5036258, "TTATC":1914128, "TTATG":2726471, "TTACA":3711757, "TTACT":2285283, "TTACC":1021655, "TTACG":682610, "TTAGA":2524782, "TTAGT":2475442, "TTAGC":1489070, "TTAGG":1849948, "TTTAA":6308043, "TTTAT":4948940, "TTTAC":2985504, "TTTAG":2893107, "TTTTA":5775369, "TTTTT":11932910, "TTTTC":4244847, "TTTTG":4948849, "TTTCA":4441973, "TTTCT":4064628, "TTTCC":2245815, "TTTCG":795884, "TTTGA":4437803, "TTTGT":5659632, "TTTGC":2501230, "TTTGG":3638689, "TTCAA":3829188, "TTCAT":4204863, "TTCAC":2155865, "TTCAG":3602383, "TTCTA":1948401, "TTCTT":3610219, 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"CATCA":3115615, "CATCT":2880486, "CATCC":1376945, "CATCG":1943754, "CATGA":2977050, "CATGT":3242036, "CATGC":1616210, "CATGG":2102097, "CACAA":3451391, "CACAT":2913508, "CACAC":6459328, "CACAG":3277634, "CACTA":1264048, "CACTT":2231445, "CACTC":1252505, "CACTG":2543082, "CACCA":2120242, "CACCT":1616140, "CACCC":775485, "CACCG":742889, "CACGA":721585, "CACGT":3552125, "CACGC":1793111, "CACGG":775789, "CAGAA":4088841, "CAGAT":4112041, "CAGAC":2452689, "CAGAG":4602632, "CAGTA":2634975, "CAGTT":3130002, "CAGTC":3435155, "CAGTG":3493878, "CAGCA":3990441, "CAGCT":2849171, "CAGCC":1563133, "CAGCG":1370333, "CAGGA":3239578, "CAGGT":2462564, "CAGGC":1427515, "CAGGG":2077687, "CTAAA":2738737, "CTAAT":1568428, "CTAAC":954136, "CTAAG":1035676, "CTATA":1542677, "CTATT":1688191, "CTATC":734864, "CTATG":1318127, "CTACA":1979172, "CTACT":1320122, "CTACC":507540, "CTACG":469990, "CTAGA":1314883, "CTAGT":1163269, "CTAGC":638424, "CTAGG":619357, "CTTAA":2266591, "CTTAT":1606519, "CTTAC":973164, 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"CCAGT":2476959, "CCAGC":2852141, "CCAGG":1841303, "CCTAA":1866174, "CCTAT":1172913, "CCTAC":1783396, "CCTAG":712797, "CCTTA":1986136, "CCTTT":3933946, "CCTTC":3481770, "CCTTG":1793173, "CCTCA":4056016, "CCTCT":4672855, "CCTCC":4459410, "CCTCG":1183140, "CCTGA":2645107, "CCTGT":2750481, "CCTGC":2423710, "CCTGG":1867698, "CCCAA":2349921, "CCCAT":1974418, "CCCAC":2398796, "CCCAG":2592504, "CCCTA":1424377, "CCCTT":2420461, "CCCTC":3521425, "CCCTG":2087569, "CCCCA":2789866, "CCCCT":2640018, "CCCCC":3755956, "CCCCG":1162629, "CCCGA":812029, "CCCGT":800707, "CCCGC":877098, "CCCGG":816992, "CCGAA":614649, "CCGAT":671927, "CCGAC":960698, "CCGAG":877244, "CCGTA":630207, "CCGTT":925117, "CCGTC":1301831, "CCGTG":867085, "CCGCA":915004, "CCGCT":1142438, "CCGCC":1147691, "CCGCG":544004, "CCGGA":712511, "CCGGT":613683, "CCGGC":946625, "CCGGG":607993, "CGAAA":796314, "CGAAT":462899, "CGAAC":524121, "CGAAG":588645, "CGATA":584014, "CGATT":633964, "CGATC":575677, "CGATG":889705, "CGACA":1515250, 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"GGGAG":1134970, "GGGTA":655460, "GGGTT":1037720, "GGGTC":887524, "GGGTG":1151687, "GGGCA":901638, "GGGCT":1022214, "GGGCC":956303, "GGGCG":604360, "GGGGA":884977, "GGGGT":834571, "GGGGC":913249, "GGGGG":6959877 }, "overrepresented_sequences": { } }, "read1_after_filtering": { "total_reads": 24338633, "total_bases": 1978994769, "q20_bases": 1923171670, "q30_bases": 1824569198, "total_cycles": 86, "quality_curves": { 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"CACAT":3770630, "CACAC":7621968, "CACAG":3224656, "CACTA":2160987, "CACTT":3112673, "CACTC":2711671, "CACTG":2899034, "CACCA":3107766, "CACCT":2284462, "CACCC":1932180, "CACCG":1077807, "CACGA":824551, "CACGT":834046, "CACGC":959390, "CACGG":652503, "CAGAA":2646736, "CAGAT":2782156, "CAGAC":2539544, "CAGAG":2549268, "CAGTA":2206612, "CAGTT":2728239, "CAGTC":2203278, "CAGTG":2206612, "CAGCA":3790930, "CAGCT":2964278, "CAGCC":2149434, "CAGCG":985467, "CAGGA":2117012, "CAGGT":1770367, "CAGGC":1312238, "CAGGG":1111399, "CTAAA":2345271, "CTAAT":1884583, "CTAAC":1535263, "CTAAG":981719, "CTATA":1587644, "CTATT":2000420, "CTATC":1453767, "CTATG":1252220, "CTACA":2828473, "CTACT":2525163, "CTACC":1621368, "CTACG":731248, "CTAGA":1003526, "CTAGT":880483, "CTAGC":728715, "CTAGG":422376, "CTTAA":2344823, "CTTAT":2066824, "CTTAC":1548815, "CTTAG":847354, "CTTTA":3311866, "CTTTT":5911727, "CTTTC":3086749, "CTTTG":3119703, "CTTCA":3585430, "CTTCT":4270558, "CTTCC":2680213, "CTTCG":812122, "CTTGA":1637180, "CTTGT":2236819, "CTTGC":1396743, "CTTGG":1061615, "CTCAA":2403307, "CTCAT":2710891, "CTCAC":3250771, "CTCAG":2331687, "CTCTA":1893239, "CTCTT":3600888, "CTCTC":4308235, "CTCTG":3605973, "CTCCA":3171418, "CTCCT":4006816, "CTCCC":2311854, "CTCCG":960335, "CTCGA":583712, "CTCGT":792469, "CTCGC":905486, "CTCGG":825403, "CTGAA":2969464, "CTGAT":2483877, "CTGAC":2107293, "CTGAG":1822083, "CTGTA":2609145, "CTGTT":3783335, "CTGTC":3003110, "CTGTG":2735410, "CTGCA":3051173, "CTGCT":3354828, "CTGCC":1886418, "CTGCG":711240, "CTGGA":2035181, "CTGGT":1826024, "CTGGC":1408014, "CTGGG":1189097, "CCAAA":3057637, "CCAAT":1537671, "CCAAC":2281003, "CCAAG":1528052, "CCATA":1417331, "CCATT":2521031, "CCATC":2605203, "CCATG":1783752, "CCACA":2865307, "CCACT":2324276, "CCACC":2594332, "CCACG":1060393, "CCAGA":2286490, "CCAGT":1983416, "CCAGC":2285606, "CCAGG":1489309, "CCTAA":1505243, "CCTAT":965430, "CCTAC":1428066, "CCTAG":533602, "CCTTA":1603714, "CCTTT":3234888, "CCTTC":2849193, "CCTTG":1460154, "CCTCA":3268801, "CCTCT":3798533, "CCTCC":3599669, "CCTCG":941179, "CCTGA":2104984, "CCTGT":2182251, "CCTGC":1943302, "CCTGG":1489458, "CCCAA":1785492, "CCCAT":1587784, "CCCAC":1807676, "CCCAG":1793583, "CCCTA":1178414, "CCCTT":1992424, "CCCTC":2868974, "CCCTG":1689322, "CCCCA":2010123, "CCCCT":2186611, "CCCCC":2396473, "CCCCG":833819, "CCCGA":593070, "CCCGT":627416, "CCCGC":640409, "CCCGG":601039, "CCGAA":489212, "CCGAT":522126, "CCGAC":745344, "CCGAG":626816, "CCGTA":483370, "CCGTT":733369, "CCGTC":1034459, "CCGTG":661311, "CCGCA":695869, "CCGCT":905966, "CCGCC":855647, "CCGCG":391105, "CCGGA":545972, "CCGGT":482385, "CCGGC":697941, "CCGGG":434832, "CGAAA":647146, "CGAAT":370886, "CGAAC":407946, "CGAAG":431598, "CGATA":470743, "CGATT":510294, "CGATC":446719, "CGATG":715828, "CGACA":1161074, "CGACT":733844, "CGACC":934189, "CGACG":502574, "CGAGA":667973, "CGAGT":509227, "CGAGC":658374, "CGAGG":560263, "CGTAA":575529, "CGTAT":565273, "CGTAC":592322, "CGTAG":424542, "CGTTA":664461, "CGTTT":1144675, "CGTTC":717897, "CGTTG":641776, "CGTCA":1012280, "CGTCT":1164100, "CGTCC":889962, "CGTCG":1257437, "CGTGA":595807, "CGTGT":2079452, "CGTGC":525108, "CGTGG":630180, "CGCAA":597737, "CGCAT":608349, "CGCAC":679931, "CGCAG":764206, "CGCTA":482048, "CGCTT":788654, "CGCTC":883543, "CGCTG":1125733, "CGCCA":853076, "CGCCT":808928, "CGCCC":812064, "CGCCG":606535, "CGCGA":220532, "CGCGT":851941, "CGCGC":211805, "CGCGG":414658, "CGGAA":1210354, "CGGAT":439063, "CGGAC":583575, "CGGAG":789397, "CGGTA":416032, "CGGTT":563830, "CGGTC":460824, "CGGTG":846911, "CGGCA":655359, "CGGCT":714308, "CGGCC":726839, "CGGCG":486066, "CGGGA":477491, "CGGGT":406175, "CGGGC":357909, "CGGGG":448806, "GAAAA":3712049, "GAAAT":2509444, "GAAAC":2138809, "GAAAG":2410842, "GAATA":1700123, "GAATT":1748916, "GAATC":1161406, "GAATG":1589964, "GAACA":2177901, "GAACT":1374089, "GAACC":1255942, "GAACG":601900, "GAAGA":2862013, "GAAGT":1627549, "GAAGC":1466930, "GAAGG":1192093, "GATAA":1643618, "GATAT":1741086, "GATAC":1005325, "GATAG":671258, "GATTA":1498110, "GATTT":2661387, "GATTC":1219781, "GATTG":1284318, "GATCA":1874976, "GATCT":1616568, "GATCC":1123230, "GATCG":1291419, "GATGA":2199066, "GATGT":2080989, "GATGC":1351758, "GATGG":1244650, "GACAA":2451335, "GACAT":2307390, "GACAC":1897068, "GACAG":1909579, "GACTA":1053036, "GACTT":1872078, "GACTC":1456545, "GACTG":1697539, "GACCA":1862447, "GACCT":1349598, "GACCC":1076615, "GACCG":567552, "GACGA":807791, "GACGT":742744, "GACGC":675215, "GACGG":721166, "GAGAA":2090440, "GAGAT":1690057, "GAGAC":1516414, "GAGAG":1666269, "GAGTA":996496, "GAGTT":1545956, "GAGTC":1110015, "GAGTG":1883636, "GAGCA":1619577, "GAGCT":1555597, "GAGCC":1194882, "GAGCG":1338922, "GAGGA":1977971, "GAGGT":1034666, "GAGGC":1129144, "GAGGG":904039, "GTAAA":2496808, "GTAAT":1840914, "GTAAC":1316846, "GTAAG":864028, "GTATA":1497843, "GTATT":2371597, "GTATC":1284531, "GTATG":1283816, "GTACA":2727172, "GTACT":1557955, "GTACC":811703, "GTACG":445572, "GTAGA":1544837, "GTAGT":1178584, "GTAGC":863428, "GTAGG":1266978, "GTTAA":2074328, "GTTAT":1906244, "GTTAC":1274925, "GTTAG":856760, "GTTTA":2773938, "GTTTT":4928797, "GTTTC":2453920, "GTTTG":2944751, "GTTCA":2171129, "GTTCT":1995616, "GTTCC":1481113, "GTTCG":463746, "GTTGA":1655778, "GTTGT":2535362, "GTTGC":1382618, "GTTGG":1179742, "GTCAA":1879283, "GTCAT":2139089, "GTCAC":1665010, "GTCAG":1685601, "GTCTA":1037970, "GTCTT":2155872, "GTCTC":1980390, "GTCTG":2106188, "GTCCA":1898344, "GTCCT":1955161, "GTCCC":1207088, "GTCCG":546751, "GTCGA":532999, "GTCGT":1364394, "GTCGC":750804, "GTCGG":533738, "GTGAA":1880032, "GTGAT":1638862, "GTGAC":1465919, "GTGAG":1166505, "GTGTA":3511363, "GTGTT":2822450, "GTGTC":1707137, "GTGTG":3071989, "GTGCA":1684178, "GTGCT":1691867, "GTGCC":1245306, "GTGCG":459852, "GTGGA":1512474, "GTGGT":1405036, "GTGGC":1027331, "GTGGG":750802, "GCAAA":2144355, "GCAAT":1279997, "GCAAC":1691599, "GCAAG":1187542, "GCATA":1124377, "GCATT":1979538, "GCATC":1604283, "GCATG":1425408, "GCACA":2029615, "GCACT":1676175, "GCACC":1329298, "GCACG":458935, "GCAGA":2166371, "GCAGT":1674834, "GCAGC":2516690, "GCAGG":1410238, "GCTAA":1278855, "GCTAT":1090512, "GCTAC":1161688, "GCTAG":559308, "GCTTA":1044596, "GCTTT":2768332, "GCTTC":1977620, "GCTTG":1020209, "GCTCA":1853654, "GCTCT":2001388, "GCTCC":1847721, "GCTCG":566047, "GCTGA":1971686, "GCTGT":2564288, "GCTGC":2280071, "GCTGG":1623576, "GCCAA":1665748, "GCCAT":1716252, "GCCAC":1388886, "GCCAG":1472140, "GCCTA":675634, "GCCTT":1778751, "GCCTC":1724338, "GCCTG":1251425, "GCCCA":1226334, "GCCCT":1238566, "GCCCC":1270682, "GCCCG":537047, "GCCGA":544833, "GCCGT":779920, "GCCGC":652528, "GCCGG":492004, "GCGAA":297332, "GCGAT":355095, "GCGAC":571488, "GCGAG":489101, "GCGTA":347250, "GCGTT":633756, "GCGTC":1404592, "GCGTG":1074623, "GCGCA":440705, "GCGCT":543358, "GCGCC":593862, "GCGCG":845585, "GCGGA":413136, "GCGGT":401395, "GCGGC":570716, "GCGGG":348487, "GGAAA":2690678, "GGAAT":1125032, "GGAAC":1031219, "GGAAG":1980519, "GGATA":916790, "GGATT":1133504, "GGATC":978902, "GGATG":1231844, "GGACA":1741829, "GGACT":1283130, "GGACC":928761, "GGACG":636411, "GGAGA":1721517, "GGAGT":1033774, "GGAGC":1217096, "GGAGG":1448520, "GGTAA":923870, "GGTAT":899393, "GGTAC":637866, "GGTAG":470891, "GGTTA":873739, "GGTTT":1845256, "GGTTC":1065291, "GGTTG":923386, "GGTCA":1267024, "GGTCT":1041993, "GGTCC":851257, "GGTCG":620398, "GGTGA":1160372, "GGTGT":1302330, "GGTGC":1252078, "GGTGG":1069205, "GGCAA":1113462, "GGCAT":974282, "GGCAC":841478, "GGCAG":1150333, "GGCTA":716712, "GGCTT":1271008, "GGCTC":1215044, "GGCTG":1423338, "GGCCA":1203896, "GGCCT":1109060, "GGCCC":813846, "GGCCG":639357, "GGCGA":393563, "GGCGT":500120, "GGCGC":406524, "GGCGG":466663, "GGGAA":1698306, "GGGAT":756678, "GGGAC":803558, "GGGAG":869307, "GGGTA":498585, "GGGTT":795664, "GGGTC":692515, "GGGTG":728936, "GGGCA":698991, "GGGCT":832709, "GGGCC":703109, "GGGCG":365889, "GGGGA":653591, "GGGGT":462595, "GGGGC":604443, "GGGGG":635172 }, "overrepresented_sequences": { } }, "command": "fastp --in1 lib_213518_sample_1703702_S14_L001_R1_001.fastq.gz --in2 lib_213518_sample_1703702_S14_L001_R2_001.fastq.gz --detect_adapter_for_pe --trim_poly_g --trim_poly_x --trim_front1 15 --trim_front2 15 --thread 50 --html /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213518_sample_1703702_S14_L001.fastp-trim.report.html --json /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213518_sample_1703702_S14_L001.fastp-trim.report.json --out1 /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213518_sample_1703702_S14_L001_R1_001.fastp-trim.fq.gz --out2 /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213518_sample_1703702_S14_L001_R2_001.fastp-trim.fq.gz " }