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"CCAGC":2677091, "CCAGG":1596395, "CCTAA":916892, "CCTAT":732797, "CCTAC":677912, "CCTAG":539445, "CCTTA":968874, "CCTTT":2156543, "CCTTC":1300842, "CCTTG":1497586, "CCTCA":1552841, "CCTCT":1775558, "CCTCC":2845044, "CCTCG":609662, "CCTGA":1754426, "CCTGT":1994852, "CCTGC":1583398, "CCTGG":1609920, "CCCAA":1135053, "CCCAT":993237, "CCCAC":890298, "CCCAG":1222633, "CCCTA":540877, "CCCTT":921727, "CCCTC":976143, "CCCTG":1236979, "CCCCA":753234, "CCCCT":732801, "CCCCC":596081, "CCCCG":454796, "CCCGA":420286, "CCCGT":467122, "CCCGC":379533, "CCCGG":447324, "CCGAA":588487, "CCGAT":647804, "CCGAC":587967, "CCGAG":748955, "CCGTA":525722, "CCGTT":777989, "CCGTC":1066004, "CCGTG":824183, "CCGCA":420837, "CCGCT":557332, "CCGCC":518734, "CCGCG":329301, "CCGGA":629525, "CCGGT":615893, "CCGGC":617015, "CCGGG":768949, "CGAAA":880117, "CGAAT":664459, "CGAAC":479935, "CGAAG":949765, "CGATA":693702, "CGATT":667534, "CGATC":633965, "CGATG":1151918, "CGACA":1019102, "CGACT":628493, "CGACC":454699, 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"CCAGT":2458579, "CCAGC":2597345, "CCAGG":1717492, "CCTAA":1868092, "CCTAT":1335420, "CCTAC":1852578, "CCTAG":741600, "CCTTA":2003155, "CCTTT":4144921, "CCTTC":3632512, "CCTTG":1941754, "CCTCA":3891657, "CCTCT":5303644, "CCTCC":5174869, "CCTCG":1178480, "CCTGA":2649099, "CCTGT":2992543, "CCTGC":2595209, "CCTGG":1788020, "CCCAA":2387242, "CCCAT":2061996, "CCCAC":2489363, "CCCAG":2599498, "CCCTA":1659367, "CCCTT":2702137, "CCCTC":3816929, "CCCTG":2181812, "CCCCA":2849578, "CCCCT":2986996, "CCCCC":4230875, "CCCCG":1247610, "CCCGA":809871, "CCCGT":851935, "CCCGC":981222, "CCCGG":811262, "CCGAA":610698, "CCGAT":647609, "CCGAC":991584, "CCGAG":892729, "CCGTA":660368, "CCGTT":943012, "CCGTC":1347849, "CCGTG":893562, "CCGCA":896721, "CCGCT":1054138, "CCGCC":1242485, "CCGCG":459241, "CCGGA":703166, "CCGGT":608836, "CCGGC":918086, "CCGGG":598707, "CGAAA":829489, "CGAAT":475387, "CGAAC":512397, "CGAAG":553666, "CGATA":647091, "CGATT":657437, "CGATC":573860, "CGATG":846312, "CGACA":1145109, 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"GTGGA":1903426, "GTGGT":1986195, "GTGGC":1409765, "GTGGG":1623707, "GCAAA":2698029, "GCAAT":1632333, "GCAAC":1986957, "GCAAG":1483919, "GCATA":1445022, "GCATT":2501718, "GCATC":2071990, "GCATG":1941452, "GCACA":2887207, "GCACT":2111497, "GCACC":1644646, "GCACG":658967, "GCAGA":3081903, "GCAGT":2109903, "GCAGC":3115151, "GCAGG":1779405, "GCTAA":1653345, "GCTAT":1347489, "GCTAC":1401327, "GCTAG":793541, "GCTTA":1298784, "GCTTT":3502671, "GCTTC":2402322, "GCTTG":1412694, "GCTCA":2485419, "GCTCT":2644844, "GCTCC":2231054, "GCTCG":718618, "GCTGA":2507445, "GCTGT":3073154, "GCTGC":2926277, "GCTGG":1719427, "GCCAA":2067120, "GCCAT":2143983, "GCCAC":1822197, "GCCAG":3083080, "GCCTA":952866, "GCCTT":2116295, "GCCTC":2223085, "GCCTG":1714585, "GCCCA":1621172, "GCCCT":1610839, "GCCCC":1777879, "GCCCG":670816, "GCCGA":714427, "GCCGT":1004468, "GCCGC":885324, "GCCGG":712204, "GCGAA":424022, "GCGAT":469053, "GCGAC":676892, "GCGAG":640136, "GCGTA":432220, "GCGTT":876543, "GCGTC":4312449, 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"GGGAG":1226858, "GGGTA":640894, "GGGTT":1108674, "GGGTC":751579, "GGGTG":1489745, "GGGCA":961656, "GGGCT":998968, "GGGCC":984021, "GGGCG":650169, "GGGGA":951516, "GGGGT":1214459, "GGGGC":936400, "GGGGG":13683491 }, "overrepresented_sequences": { } }, "read1_after_filtering": { "total_reads": 24696450, "total_bases": 1986061926, "q20_bases": 1928515918, "q30_bases": 1828580559, "total_cycles": 86, "quality_curves": { 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"T":[35.8655,35.8336,35.8335,35.8309,35.8265,35.8245,35.7956,35.7819,35.7516,35.7327,35.6462,35.6246,35.6439,35.6328,35.6096,35.5794,35.5901,35.5496,35.5661,35.5783,35.5415,35.5363,35.5072,35.5214,35.529,35.5168,35.4809,35.4511,35.4482,35.4528,35.4461,35.4402,35.4146,35.436,35.4056,35.3939,35.3699,35.3313,35.3581,35.3502,35.3769,35.2913,35.3255,35.3388,35.2999,35.329,35.279,35.2584,35.2792,35.2406,35.2307,35.2441,35.2666,35.2079,35.243,35.2628,35.2735,35.2646,35.2162,35.1888,35.1589,35.1624,35.169,35.181,35.1507,35.1418,35.0837,35.1115,35.0972,35.0925,35.0351,35.0003,35.0013,35.0179,34.9723,35.0047,35.0616,35.0429,35.0259,34.9884,34.9459,34.9558,34.9265,34.9331,34.9433,34.9072], "C":[36.3116,36.3167,36.2907,36.2787,36.2678,36.2579,36.2481,36.229,36.2088,36.2015,36.1302,36.1351,36.1323,36.1305,36.1083,36.0934,36.0779,36.0826,36.086,36.0728,36.0749,36.064,36.0501,36.048,36.0385,36.0355,36.0177,36.019,36.0011,35.9975,36.0129,36.0109,35.9752,35.9846,35.9815,35.9908,35.9481,35.9632,35.9345,35.9522,35.9053,35.9249,35.919,35.9114,35.9021,35.8871,35.8882,35.8714,35.853,35.8519,35.8417,35.8651,35.8709,35.8355,35.8397,35.8441,35.8144,35.8185,35.7864,35.7778,35.7669,35.7579,35.7585,35.7556,35.7426,35.7245,35.7084,35.7094,35.7031,35.6809,35.6615,35.6343,35.6335,35.6406,35.6182,35.6366,35.6483,35.6257,35.6225,35.598,35.5817,35.5842,35.5747,35.5572,35.5853,35.4872], "G":[35.8588,35.8493,35.8426,35.8434,35.8471,35.8349,35.8298,35.8101,35.7922,35.792,35.6953,35.6863,35.7025,35.6842,35.6627,35.6492,35.6486,35.6189,35.6255,35.6399,35.619,35.6046,35.5731,35.5728,35.5944,35.5865,35.5528,35.5423,35.536,35.4972,35.5162,35.4616,35.4688,35.5121,35.4607,35.4746,35.4567,35.4889,35.4208,35.4202,35.4591,35.3866,35.403,35.4292,35.3623,35.3813,35.4076,35.4093,35.3488,35.3676,35.3158,35.4138,35.3812,35.3078,35.334,35.3499,35.3753,35.3666,35.3521,35.3155,35.305,35.281,35.2942,35.2848,35.2778,35.2431,35.2159,35.2299,35.2308,35.1973,35.1722,35.1299,35.1389,35.1288,35.0933,35.0981,35.1636,35.1179,35.1278,35.0918,35.0708,35.0556,35.0452,35.0203,35.0483,34.9558], 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"CACAA":3234826, "CACAT":3708192, "CACAC":7435207, "CACAG":3192501, "CACTA":1924104, "CACTT":2908859, "CACTC":2564494, "CACTG":2962074, "CACCA":3020974, "CACCT":2454320, "CACCC":1893081, "CACCG":961890, "CACGA":635756, "CACGT":870486, "CACGC":953193, "CACGG":670416, "CAGAA":2667682, "CAGAT":2990645, "CAGAC":3291805, "CAGAG":2584655, "CAGTA":2186964, "CAGTT":2639391, "CAGTC":2239908, "CAGTG":2404245, "CAGCA":3511772, "CAGCT":2906617, "CAGCC":2250040, "CAGCG":1038987, "CAGGA":2069540, "CAGGT":1605899, "CAGGC":1354286, "CAGGG":1100487, "CTAAA":2363558, "CTAAT":1940982, "CTAAC":1481617, "CTAAG":1021123, "CTATA":1582088, "CTATT":2018867, "CTATC":1599620, "CTATG":1300730, "CTACA":2445119, "CTACT":2191338, "CTACC":1423096, "CTACG":689921, "CTAGA":1091982, "CTAGT":894529, "CTAGC":726720, "CTAGG":425517, "CTTAA":2258275, "CTTAT":2184904, "CTTAC":1489954, "CTTAG":1603323, "CTTTA":3306010, "CTTTT":5797442, "CTTTC":3338566, "CTTTG":3150628, "CTTCA":3497781, "CTTCT":4504269, "CTTCC":2828291, "CTTCG":732312, "CTTGA":1684934, "CTTGT":2375266, "CTTGC":1437014, "CTTGG":1091861, "CTCAA":2435784, "CTCAT":2771613, "CTCAC":2932537, "CTCAG":2527695, "CTCTA":1893211, "CTCTT":3929828, "CTCTC":5588386, "CTCTG":3832475, "CTCCA":3295284, "CTCCT":4654502, "CTCCC":2649223, "CTCCG":1001561, "CTCGA":559604, "CTCGT":840899, "CTCGC":948618, "CTCGG":855267, "CTGAA":2942839, "CTGAT":2530608, "CTGAC":2122859, "CTGAG":1915783, "CTGTA":2694956, "CTGTT":3621592, "CTGTC":3283896, "CTGTG":2884557, "CTGCA":3150009, "CTGCT":3454001, "CTGCC":2056977, "CTGCG":715998, "CTGGA":1905189, "CTGGT":1573597, "CTGGC":1386317, "CTGGG":1007112, "CCAAA":2894043, "CCAAT":1575985, "CCAAC":2239440, "CCAAG":1454248, "CCATA":1462915, "CCATT":2565298, "CCATC":2800724, "CCATG":1832874, "CCACA":2614237, "CCACT":2255064, "CCACC":2519125, "CCACG":845376, "CCAGA":3172963, "CCAGT":1973307, "CCAGC":2066722, "CCAGG":1377221, "CCTAA":1484272, "CCTAT":1108151, "CCTAC":1489755, "CCTAG":541225, "CCTTA":1610055, "CCTTT":3415105, "CCTTC":2983355, "CCTTG":1576808, "CCTCA":3106918, "CCTCT":4314851, "CCTCC":4189747, "CCTCG":938487, "CCTGA":2108606, "CCTGT":2389341, "CCTGC":2080008, "CCTGG":1419612, "CCCAA":1769281, "CCCAT":1649867, "CCCAC":1810312, "CCCAG":1757622, "CCCTA":1379857, "CCCTT":2235304, "CCCTC":3088834, "CCCTG":1757075, "CCCCA":1982465, "CCCCT":2458691, "CCCCC":2627744, "CCCCG":879741, "CCCGA":588827, "CCCGT":669315, "CCCGC":702559, "CCCGG":585106, "CCGAA":479303, "CCGAT":507996, "CCGAC":764593, "CCGAG":623154, "CCGTA":508290, "CCGTT":746509, "CCGTC":1075275, "CCGTG":681267, "CCGCA":654933, "CCGCT":830620, "CCGCC":915476, "CCGCG":321222, "CCGGA":531941, "CCGGT":473014, "CCGGC":665763, "CCGGG":407897, "CGAAA":666460, "CGAAT":380241, "CGAAC":396499, "CGAAG":407203, "CGATA":518726, "CGATT":526122, "CGATC":443939, "CGATG":675833, "CGACA":862010, "CGACT":708831, "CGACC":781999, "CGACG":402561, "CGAGA":656417, "CGAGT":542505, "CGAGC":631494, "CGAGG":552564, "CGTAA":558614, "CGTAT":604786, "CGTAC":573949, "CGTAG":473420, "CGTTA":700158, "CGTTT":1215236, "CGTTC":733519, "CGTTG":662898, "CGTCA":1014623, "CGTCT":1188003, "CGTCC":894093, "CGTCG":1288154, "CGTGA":577753, "CGTGT":1770516, "CGTGC":526337, "CGTGG":642351, "CGCAA":554056, "CGCAT":608060, "CGCAC":751091, "CGCAG":730076, "CGCTA":456637, "CGCTT":731567, "CGCTC":942592, "CGCTG":1042363, "CGCCA":872472, "CGCCT":793819, "CGCCC":883329, "CGCCG":606656, "CGCGA":173108, "CGCGT":240099, "CGCGC":232715, "CGCGG":267667, "CGGAA":1326164, "CGGAT":479716, "CGGAC":576414, "CGGAG":722157, "CGGTA":387121, "CGGTT":541665, "CGGTC":468276, "CGGTG":846103, "CGGCA":703125, "CGGCT":716327, "CGGCC":664159, "CGGCG":404223, "CGGGA":438584, "CGGGT":328951, "CGGGC":354556, "CGGGG":421534, "GAAAA":3606754, "GAAAT":2550583, "GAAAC":2194366, "GAAAG":2654845, "GAATA":1772980, "GAATT":1673368, "GAATC":1186123, "GAATG":1663192, "GAACA":2168420, "GAACT":1360741, "GAACC":1286826, "GAACG":588055, "GAAGA":2922773, "GAAGT":1595301, "GAAGC":1361678, "GAAGG":1169387, "GATAA":1692303, "GATAT":1891172, "GATAC":1049105, "GATAG":746409, "GATTA":1575402, "GATTT":2695984, "GATTC":1259444, "GATTG":1315030, "GATCA":1860893, "GATCT":1653889, "GATCC":1094873, "GATCG":1417269, "GATGA":2219799, "GATGT":2114108, "GATGC":1367908, "GATGG":1204166, "GACAA":2155422, "GACAT":2233667, "GACAC":1910693, "GACAG":1966080, "GACTA":1053138, "GACTT":2558303, "GACTC":1457738, "GACTG":1664791, "GACCA":1714843, "GACCT":1398285, "GACCC":1088177, "GACCG":524952, "GACGA":755031, "GACGT":746643, "GACGC":686547, "GACGG":659184, "GAGAA":2107750, "GAGAT":1722533, "GAGAC":1489478, "GAGAG":1818520, "GAGTA":1047870, "GAGTT":1625851, "GAGTC":1133713, "GAGTG":2124531, "GAGCA":1708865, "GAGCT":1635677, "GAGCC":1168139, "GAGCG":1460431, "GAGGA":1953650, "GAGGT":1081729, "GAGGC":1083765, "GAGGG":915439, "GTAAA":2465077, "GTAAT":1840318, "GTAAC":1317784, "GTAAG":889602, "GTATA":1584071, "GTATT":2388168, "GTATC":1262066, "GTATG":1337961, "GTACA":2040409, "GTACT":1512326, "GTACC":791963, "GTACG":427762, "GTAGA":1656254, "GTAGT":1218011, "GTAGC":883153, "GTAGG":1450896, "GTTAA":2034061, "GTTAT":1900719, "GTTAC":1280361, "GTTAG":948982, "GTTTA":2818150, "GTTTT":4858700, "GTTTC":2511118, "GTTTG":2955461, "GTTCA":2181911, "GTTCT":2000737, "GTTCC":1395331, "GTTCG":417287, "GTTGA":1696889, "GTTGT":2361696, "GTTGC":1287189, "GTTGG":1135423, "GTCAA":1805591, "GTCAT":2136627, "GTCAC":1744104, "GTCAG":1738275, "GTCTA":1072859, "GTCTT":2229251, "GTCTC":2206063, "GTCTG":2182921, "GTCCA":1782309, "GTCCT":2026117, "GTCCC":1220839, "GTCCG":547041, "GTCGA":452361, "GTCGT":1501696, "GTCGC":660605, "GTCGG":516636, "GTGAA":1939299, "GTGAT":1705511, "GTGAC":1546458, "GTGAG":1241465, "GTGTA":3068040, "GTGTT":2944564, "GTGTC":1818533, "GTGTG":4723869, "GTGCA":1799953, "GTGCT":1645580, "GTGCC":1926837, "GTGCG":473708, "GTGGA":1480366, "GTGGT":1477086, "GTGGC":1096301, "GTGGG":791980, "GCAAA":2152464, "GCAAT":1318344, "GCAAC":1585249, "GCAAG":1152049, "GCATA":1178801, "GCATT":2048953, "GCATC":1680793, "GCATG":1578914, "GCACA":2287669, "GCACT":1703763, "GCACC":1308177, "GCACG":494081, "GCAGA":2155931, "GCAGT":1695997, "GCAGC":2451723, "GCAGG":1424841, "GCTAA":1334930, "GCTAT":1091926, "GCTAC":1127502, "GCTAG":594812, "GCTTA":1041146, "GCTTT":2840774, "GCTTC":1902315, "GCTTG":1132583, "GCTCA":1965962, "GCTCT":2119332, "GCTCC":1754793, "GCTCG":563216, "GCTGA":1982705, "GCTGT":2457447, "GCTGC":2349440, "GCTGG":1359198, "GCCAA":1623667, "GCCAT":1688115, "GCCAC":1427126, "GCCAG":2273588, "GCCTA":712059, "GCCTT":1689716, "GCCTC":1776825, "GCCTG":1362395, "GCCCA":1224833, "GCCCT":1274376, "GCCCC":1305664, "GCCCG":504262, "GCCGA":530659, "GCCGT":743551, "GCCGC":657842, "GCCGG":511660, "GCGAA":313999, "GCGAT":377059, "GCGAC":524685, "GCGAG":478993, "GCGTA":342988, "GCGTT":687849, "GCGTC":1498033, "GCGTG":568762, "GCGCA":463049, "GCGCT":562205, "GCGCC":562415, "GCGCG":181416, "GCGGA":395079, "GCGGT":364748, "GCGGC":495933, "GCGGG":324588, "GGAAA":2914689, "GGAAT":1127668, "GGAAC":1041657, "GGAAG":2057626, "GGATA":910318, "GGATT":1207397, "GGATC":921054, "GGATG":1223447, "GGACA":1667815, "GGACT":1214389, "GGACC":906524, "GGACG":626185, "GGAGA":1690588, "GGAGT":1033875, "GGAGC":1200510, "GGAGG":1412843, "GGTAA":909301, "GGTAT":889335, "GGTAC":614450, "GGTAG":540417, "GGTTA":912799, "GGTTT":1880649, "GGTTC":954743, "GGTTG":1008528, "GGTCA":1225920, "GGTCT":1045046, "GGTCC":755120, "GGTCG":509779, "GGTGA":1191213, "GGTGT":1348280, "GGTGC":944164, "GGTGG":1090195, "GGCAA":1114436, "GGCAT":1023724, "GGCAC":888778, "GGCAG":1258933, "GGCTA":721620, "GGCTT":1315097, "GGCTC":1193265, "GGCTG":1414754, "GGCCA":1189184, "GGCCT":1102698, "GGCCC":803519, "GGCCG":572489, "GGCGA":408591, "GGCGT":464702, "GGCGC":379871, "GGCGG":436130, "GGGAA":1847644, "GGGAT":771166, "GGGAC":778800, "GGGAG":898626, "GGGTA":475754, "GGGTT":798982, "GGGTC":581702, "GGGTG":728182, "GGGCA":742563, "GGGCT":797635, "GGGCC":695909, "GGGCG":340979, "GGGGA":676804, "GGGGT":505033, "GGGGC":561681, "GGGGG":773189 }, "overrepresented_sequences": { } }, "command": "fastp --in1 lib_213498_sample_1703743_S45_L001_R1_001.fastq.gz --in2 lib_213498_sample_1703743_S45_L001_R2_001.fastq.gz --detect_adapter_for_pe --trim_poly_g --trim_poly_x --trim_front1 15 --trim_front2 15 --thread 50 --html /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213498_sample_1703743_S45_L001.fastp-trim.report.html --json /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213498_sample_1703743_S45_L001.fastp-trim.report.json --out1 /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213498_sample_1703743_S45_L001_R1_001.fastp-trim.fq.gz --out2 /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213498_sample_1703743_S45_L001_R2_001.fastp-trim.fq.gz " }