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"CCACC":1534260, "CCACG":715524, "CCAGA":3765382, "CCAGT":6342048, "CCAGC":1876043, "CCAGG":2815712, "CCTAA":1588929, "CCTAT":1568600, "CCTAC":1354639, "CCTAG":1679226, "CCTTA":1325229, "CCTTT":2380517, "CCTTC":1687063, "CCTTG":2221234, "CCTCA":2002357, "CCTCT":2534279, "CCTCC":1878207, "CCTCG":660787, "CCTGA":2256536, "CCTGT":3351299, "CCTGC":1860009, "CCTGG":2694096, "CCCAA":1570673, "CCCAT":1542573, "CCCAC":1273798, "CCCAG":1994260, "CCCTA":1011225, "CCCTT":1229933, "CCCTC":1401932, "CCCTG":1920167, "CCCCA":1290567, "CCCCT":1099792, "CCCCC":925933, "CCCCG":526286, "CCCGA":524249, "CCCGT":524109, "CCCGC":380480, "CCCGG":524156, "CCGAA":797604, "CCGAT":779693, "CCGAC":571485, "CCGAG":858731, "CCGTA":711770, "CCGTT":883680, "CCGTC":852441, "CCGTG":1053808, "CCGCA":517340, "CCGCT":562455, "CCGCC":511338, "CCGCG":224290, "CCGGA":612631, "CCGGT":877315, "CCGGC":602441, "CCGGG":874851, "CGAAA":1099824, "CGAAT":841994, "CGAAC":609351, "CGAAG":999661, "CGATA":1079578, "CGATT":1032460, "CGATC":763838, "CGATG":1398037, "CGACA":3086528, "CGACT":710375, "CGACC":484699, "CGACG":347125, "CGAGA":2476127, "CGAGT":961500, "CGAGC":726459, "CGAGG":1386449, "CGTAA":1003149, "CGTAT":1074724, "CGTAC":3010136, "CGTAG":1097770, "CGTTA":1025072, "CGTTT":1730146, "CGTTC":892498, "CGTTG":1343673, "CGTCA":1136693, "CGTCT":6848635, "CGTCC":632658, "CGTCG":528125, "CGTGA":1241461, "CGTGT":1944328, "CGTGC":731741, "CGTGG":1462324, "CGCAA":728522, "CGCAT":629265, "CGCAC":661738, "CGCAG":908836, "CGCTA":611821, "CGCTT":545303, "CGCTC":636621, "CGCTG":1084239, "CGCCA":666213, "CGCCT":664494, "CGCCC":379112, "CGCCG":378849, "CGCGA":297182, "CGCGT":3061611, "CGCGC":288715, "CGCGG":443049, "CGGAA":9791742, "CGGAT":985766, "CGGAC":677262, "CGGAG":1576556, "CGGTA":1087413, "CGGTT":1281023, "CGGTC":702717, "CGGTG":1358973, "CGGCA":943391, "CGGCT":806063, "CGGCC":584441, "CGGCG":618292, "CGGGA":1115841, "CGGGT":1036042, "CGGGC":622924, "CGGGG":1752072, "GAAAA":7675825, "GAAAT":5263706, 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"GC":[0.687605,0.479808,0.439977,0.468558,0.435947,0.412776,0.42096,0.464836,0.478331,0.395713,0.538462,0.498939,0.452663,0.440453,0.445426,0.441137,0.443304,0.434901,0.442034,0.434904,0.443615,0.439549,0.442491,0.433649,0.441799,0.435809,0.437895,0.437375,0.441626,0.432218,0.439681,0.432113,0.438082,0.435281,0.438907,0.431562,0.440204,0.433487,0.438635,0.434652,0.440568,0.431681,0.441876,0.433772,0.438937,0.435167,0.437927,0.432092,0.441401,0.431457,0.436871,0.432669,0.438435,0.432623,0.441585,0.434622,0.439467,0.434968,0.441275,0.434162,0.443824,0.435622,0.442088,0.439562,0.443898,0.437081,0.444987,0.438889,0.442771,0.440602,0.444712,0.436808,0.44359,0.435452,0.440685,0.438935,0.443016,0.43557,0.444374,0.4385,0.445648,0.440341,0.446604,0.440829,0.448664,0.44466,0.449082,0.446854,0.451258,0.445476,0.456418,0.449357,0.453216,0.451298,0.455584,0.451657,0.458,0.452078,0.456064,0.454333,0.459489] }, "kmer_count": { "AAAAA":12946380, "AAAAT":6537225, "AAAAC":5338673, "AAAAG":3815643, 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"ACGTT":1765889, "ACGTC":1213468, "ACGTG":1164173, "ACGCA":1438504, "ACGCT":1331857, "ACGCC":1116326, "ACGCG":354213, "ACGGA":1044012, "ACGGT":955694, "ACGGC":939240, "ACGGG":585991, "AGAAA":4669348, "AGAAT":3145503, "AGAAC":3430399, "AGAAG":3013011, "AGATA":2814241, "AGATT":2689855, "AGATC":12431135, "AGATG":3186351, "AGACA":5796604, "AGACT":3391054, "AGACC":3024059, "AGACG":1128136, "AGAGA":6412019, "AGAGT":5698949, "AGAGC":9608729, "AGAGG":2837535, "AGTAA":2960146, "AGTAT":3506928, "AGTAC":2786392, "AGTAG":2340640, "AGTTA":2952700, "AGTTT":3847165, "AGTTC":2624543, "AGTTG":2608498, "AGTCA":4005197, "AGTCT":3852880, "AGTCC":2983445, "AGTCG":765496, "AGTGA":2809190, "AGTGT":6816221, "AGTGC":2240187, "AGTGG":2256418, "AGCAA":3031216, "AGCAT":3224048, "AGCAC":2994266, "AGCAG":3712641, "AGCTA":2803552, "AGCTT":2651951, "AGCTC":2964856, "AGCTG":3536191, "AGCCA":3792635, "AGCCT":3314845, "AGCCC":3062912, "AGCCG":828479, "AGCGA":782821, "AGCGT":7579253, "AGCGC":813939, "AGCGG":713106, 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"TACCC":4183024, "TACCG":1097762, "TACGA":892944, "TACGT":1143304, "TACGC":765258, "TACGG":721592, "TAGAA":3165791, "TAGAT":5061522, "TAGAC":2807383, "TAGAG":2367319, "TAGTA":2403307, "TAGTT":3172724, "TAGTC":2859537, "TAGTG":2579724, "TAGCA":2691253, "TAGCT":2980386, "TAGCC":2859359, "TAGCG":643596, "TAGGA":1962539, "TAGGT":1687841, "TAGGC":1785478, "TAGGG":5529306, "TTAAA":5728929, "TTAAT":4647449, "TTAAC":4830818, "TTAAG":2216099, "TTATA":4680198, "TTATT":7646796, "TTATC":4036581, "TTATG":3458923, "TTACA":5665844, "TTACT":4916669, "TTACC":5700698, "TTACG":959584, "TTAGA":3030776, "TTAGT":2850520, "TTAGC":2326664, "TTAGG":1693259, "TTTAA":6433348, "TTTAT":7477137, "TTTAC":5069427, "TTTAG":3683195, "TTTTA":7425403, "TTTTT":11973055, "TTTTC":6815532, "TTTTG":6551451, "TTTCA":6482092, "TTTCT":10349060, "TTTCC":6070557, "TTTCG":1061281, "TTTGA":5246906, "TTTGT":7435280, "TTTGC":3554318, "TTTGG":3723087, "TTCAA":5470339, "TTCAT":5981831, "TTCAC":5341308, "TTCAG":4370488, "TTCTA":5230871, "TTCTT":6581166, "TTCTC":10807542, "TTCTG":5512673, "TTCCA":5591076, "TTCCT":7023408, "TTCCC":5068274, "TTCCG":933870, "TTCGA":834953, "TTCGT":1091688, "TTCGC":785038, "TTCGG":787513, "TTGAA":4285486, "TTGAT":3950514, "TTGAC":3632471, "TTGAG":3001338, "TTGTA":4072202, "TTGTT":7067260, "TTGTC":4371447, "TTGTG":4424474, "TTGCA":3406100, "TTGCT":3495894, "TTGCC":2541805, "TTGCG":742768, "TTGGA":2885435, "TTGGT":2980743, "TTGGC":2150787, "TTGGG":2012353, "TCAAA":5128962, "TCAAT":4861803, "TCAAC":4474749, "TCAAG":3113593, "TCATA":4414081, "TCATT":7003860, "TCATC":6053070, "TCATG":5155364, "TCACA":7088228, "TCACT":7407273, "TCACC":5210768, "TCACG":1212964, "TCAGA":5014163, "TCAGT":4750094, "TCAGC":3397409, "TCAGG":2419359, "TCTAA":4208570, "TCTAT":7892637, "TCTAC":7133660, "TCTAG":3061003, "TCTTA":3665476, "TCTTT":8981196, "TCTTC":7731789, "TCTTG":3153415, "TCTCA":7618881, "TCTCT":42045785, "TCTCC":12790234, "TCTCG":2603311, "TCTGA":4903498, "TCTGT":12159539, "TCTGC":4458577, 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"TGTCC":5120813, "TGTCG":1186691, "TGTGA":3834736, "TGTGT":13894073, "TGTGC":3031901, "TGTGG":3618653, "TGCAA":3129957, "TGCAT":3940176, "TGCAC":3372419, "TGCAG":3772843, "TGCTA":3241408, "TGCTT":3801960, "TGCTC":3702521, "TGCTG":4337329, "TGCCA":3691136, "TGCCT":3760011, "TGCCC":2693827, "TGCCG":941519, "TGCGA":656186, "TGCGT":1053522, "TGCGC":752603, "TGCGG":581780, "TGGAA":3380237, "TGGAT":2603687, "TGGAC":2754054, "TGGAG":3128260, "TGGTA":2334301, "TGGTT":3363941, "TGGTC":3070532, "TGGTG":3340318, "TGGCA":2781141, "TGGCT":3044027, "TGGCC":2439572, "TGGCG":734587, "TGGGA":2178452, "TGGGT":2365047, "TGGGC":1465217, "TGGGG":2841447, "CAAAA":5821039, "CAAAT":4754928, "CAAAC":5121911, "CAAAG":3335820, "CAATA":4518615, "CAATT":3734883, "CAATC":3357255, "CAATG":3970746, "CAACA":7540102, "CAACT":3979115, "CAACC":4705745, "CAACG":1394215, "CAAGA":3575407, "CAAGT":2596477, "CAAGC":2369433, "CAAGG":2375992, "CATAA":4017320, "CATAT":4886687, "CATAC":5207180, "CATAG":2948242, "CATTA":6021437, "CATTT":7425661, "CATTC":5208259, "CATTG":4145754, "CATCA":6648611, "CATCT":7213272, "CATCC":5664727, "CATCG":1413516, "CATGA":3653422, "CATGT":6626161, "CATGC":3122337, "CATGG":2923564, "CACAA":6224053, "CACAT":7455683, "CACAC":18820297, "CACAG":6563803, "CACTA":6570660, "CACTT":4609852, "CACTC":7559453, "CACTG":6183048, "CACCA":7707561, "CACCT":5679727, "CACCC":5433199, "CACCG":1433518, "CACGA":1046683, "CACGT":1482118, "CACGC":1654312, "CACGG":1044430, "CAGAA":4243399, "CAGAT":8535438, "CAGAC":4967378, "CAGAG":4499358, "CAGTA":4656811, "CAGTT":4050395, "CAGTC":4854774, "CAGTG":3924244, "CAGCA":5106688, "CAGCT":4287654, "CAGCC":4229988, "CAGCG":1166073, "CAGGA":3267734, "CAGGT":3062638, "CAGGC":2593002, "CAGGG":2189549, "CTAAA":3896892, "CTAAT":3372686, "CTAAC":4855212, "CTAAG":1488361, "CTATA":5612312, "CTATT":4857773, "CTATC":5900854, "CTATG":3033610, "CTACA":7239343, "CTACT":8225462, "CTACC":6203345, "CTACG":1067152, "CTAGA":3221229, "CTAGT":2828062, "CTAGC":2576088, "CTAGG":1745013, "CTTAA":2996148, "CTTAT":3589971, "CTTAC":3234589, "CTTAG":1723219, "CTTTA":5258929, "CTTTT":6426797, "CTTTC":7868874, "CTTTG":4369110, "CTTCA":5921902, "CTTCT":8164484, "CTTCC":6008083, "CTTCG":1025207, "CTTGA":2745374, "CTTGT":3553416, "CTTGC":2234937, "CTTGG":1771616, "CTCAA":4582741, "CTCAT":7138988, "CTCAC":7407929, "CTCAG":4425920, "CTCTA":8941154, "CTCTT":9651904, "CTCTC":40125081, "CTCTG":10005792, "CTCCA":8559994, "CTCCT":11968790, "CTCCC":8921763, "CTCCG":1470597, "CTCGA":879297, "CTCGT":1441641, "CTCGC":1987680, "CTCGG":1407054, "CTGAA":4198117, "CTGAT":3838992, "CTGAC":4984540, "CTGAG":3246280, "CTGTA":6894707, "CTGTT":7667230, "CTGTC":10390124, "CTGTG":5158918, "CTGCA":4574901, "CTGCT":5624614, "CTGCC":4284984, "CTGCG":913893, "CTGGA":3288316, "CTGGT":3286839, "CTGGC":2696699, "CTGGG":2109187, "CCAAA":4776755, "CCAAT":3623193, "CCAAC":4661019, "CCAAG":2804751, "CCATA":4375776, "CCATT":5237242, "CCATC":6879015, "CCATG":3928462, "CCACA":7254026, "CCACT":6626980, "CCACC":6565234, "CCACG":1456447, "CCAGA":6460944, "CCAGT":4273605, "CCAGC":3709810, "CCAGG":2947688, "CCTAA":3499026, "CCTAT":3883913, "CCTAC":5418489, "CCTAG":2358186, "CCTTA":3418916, "CCTTT":5721677, "CCTTC":6189649, "CCTTG":2749827, "CCTCA":7725206, "CCTCT":14082537, "CCTCC":9981958, "CCTCG":1353965, "CCTGA":3661381, "CCTGT":5998392, "CCTGC":3743675, "CCTGG":3004666, "CCCAA":4079145, "CCCAT":4674855, "CCCAC":5674617, "CCCAG":5097855, "CCCTA":5301514, "CCCTT":4762251, "CCCTC":9992483, "CCCTG":4738752, "CCCCA":6204334, "CCCCT":6926406, "CCCCC":7699119, "CCCCG":1755060, "CCCGA":919919, "CCCGT":1257475, "CCCGC":1308719, "CCCGG":1001028, "CCGAA":728731, "CCGAT":940459, "CCGAC":1016828, "CCGAG":1004569, "CCGTA":1100501, "CCGTT":1222409, "CCGTC":1557968, "CCGTG":981863, "CCGCA":1046221, "CCGCT":1257949, "CCGCC":1502360, "CCGCG":459030, "CCGGA":756434, "CCGGT":868901, "CCGGC":877979, "CCGGG":871421, "CGAAA":906152, "CGAAT":724594, "CGAAC":728009, "CGAAG":603780, "CGATA":866520, "CGATT":893876, "CGATC":823972, "CGATG":934026, "CGACA":1366744, "CGACT":969177, "CGACC":1133994, "CGACG":462429, "CGAGA":1379589, "CGAGT":657955, "CGAGC":695222, "CGAGG":757047, "CGTAA":836529, "CGTAT":1001613, "CGTAC":881119, "CGTAG":837383, "CGTTA":1207444, "CGTTT":1723389, "CGTTC":1344457, "CGTTG":1148493, "CGTCA":1459975, "CGTCT":1825470, "CGTCC":1252771, "CGTCG":6568186, "CGTGA":858665, "CGTGT":6609222, "CGTGC":841351, "CGTGG":1028068, "CGCAA":928978, "CGCAT":881791, "CGCAC":1224581, "CGCAG":1120484, "CGCTA":1065034, "CGCTT":963719, "CGCTC":2292161, "CGCTG":1429960, "CGCCA":1323072, "CGCCT":1093661, "CGCCC":1563922, "CGCCG":748281, "CGCGA":283422, "CGCGT":314979, "CGCGC":581770, "CGCGG":476547, "CGGAA":9083578, "CGGAT":626262, "CGGAC":801475, "CGGAG":955268, "CGGTA":811795, "CGGTT":772995, "CGGTC":871873, "CGGTG":1417149, "CGGCA":901503, "CGGCT":906432, "CGGCC":1015067, "CGGCG":562055, "CGGGA":699212, "CGGGT":601850, "CGGGC":672322, "CGGGG":1238361, "GAAAA":4110459, "GAAAT":3688787, "GAAAC":3170636, "GAAAG":6311174, "GAATA":2843877, "GAATT":2512561, "GAATC":1842403, "GAATG":2748588, "GAACA":3924733, "GAACT":2341692, "GAACC":2193233, "GAACG":1004367, "GAAGA":10686231, "GAAGT":2273847, "GAAGC":1718313, "GAAGG":1912647, "GATAA":2207302, "GATAT":2681064, "GATAC":1951076, "GATAG":1571190, "GATTA":2281100, "GATTT":3493893, "GATTC":1996948, "GATTG":2161604, "GATCA":2450973, "GATCT":3156996, "GATCC":1714204, "GATCG":9814284, "GATGA":2922588, "GATGT":3203721, "GATGC":1880448, "GATGG":2040149, "GACAA":3468470, "GACAT":3854535, "GACAC":4111929, "GACAG":4119807, "GACTA":2568946, "GACTT":2487240, "GACTC":2652746, "GACTG":3245049, "GACCA":3581655, "GACCT":2514142, "GACCC":2656497, "GACCG":736563, "GACGA":1058879, "GACGT":953596, "GACGC":761795, "GACGG":801052, "GAGAA":3189096, "GAGAT":4084593, "GAGAC":2803286, "GAGAG":4542803, "GAGTA":1759860, "GAGTT":2056117, "GAGTC":1694155, "GAGTG":5190734, "GAGCA":2249166, "GAGCT":2147678, "GAGCC":1848146, "GAGCG":7729688, "GAGGA":2822765, "GAGGT":1877304, "GAGGC":1631032, "GAGGG":1928128, "GTAAA":3549331, "GTAAT":2976619, "GTAAC":2510249, "GTAAG":1501357, "GTATA":3567154, "GTATT":4016613, "GTATC":2522313, "GTATG":2586892, "GTACA":3753093, "GTACT":2744624, "GTACC":2388281, "GTACG":676942, "GTAGA":3488205, "GTAGT":2306438, "GTAGC":1897674, "GTAGG":6090669, "GTTAA":3027201, "GTTAT":3338284, "GTTAC":4990300, "GTTAG":2067312, "GTTTA":3921193, "GTTTT":6128516, "GTTTC":4123708, "GTTTG":4051471, "GTTCA":3610078, "GTTCT":4585186, "GTTCC":2879729, "GTTCG":621544, "GTTGA":2997332, "GTTGT":4257902, "GTTGC":2040657, "GTTGG":2213531, "GTCAA":3064241, "GTCAT":3964363, "GTCAC":3536260, "GTCAG":3247943, "GTCTA":3065772, "GTCTT":3648939, "GTCTC":6664416, "GTCTG":4933176, "GTCCA":3335661, "GTCCT":3880479, "GTCCC":3130441, "GTCCG":689484, "GTCGA":666627, "GTCGT":6772759, "GTCGC":970918, "GTCGG":768636, "GTGAA":2793358, "GTGAT":2466763, "GTGAC":2309058, "GTGAG":1997420, "GTGTA":9317179, "GTGTT":7461084, "GTGTC":3255884, "GTGTG":9869749, "GTGCA":2516818, "GTGCT":2440928, "GTGCC":1873552, "GTGCG":742138, "GTGGA":2551538, "GTGGT":3127555, "GTGGC":1765355, "GTGGG":2953541, "GCAAA":2730497, "GCAAT":2205437, "GCAAC":2297707, "GCAAG":1785436, "GCATA":2090856, "GCATT":3085749, "GCATC":2446675, "GCATG":2339215, "GCACA":3687085, "GCACT":2582543, "GCACC":2317812, "GCACG":787708, "GCAGA":3439134, "GCAGT":2558185, "GCAGC":2860058, "GCAGG":2131032, "GCTAA":2156292, "GCTAT":2438777, "GCTAC":2862703, "GCTAG":1813966, "GCTTA":1448456, "GCTTT":3558520, "GCTTC":2669884, "GCTTG":1693628, "GCTCA":2683403, "GCTCT":4734431, "GCTCC":2796278, "GCTCG":775223, "GCTGA":2670742, "GCTGT":4082478, "GCTGC":2991745, "GCTGG":2158761, "GCCAA":2739072, "GCCAT":3160087, "GCCAC":2899675, "GCCAG":2723605, "GCCTA":2090914, "GCCTT":2747228, "GCCTC":3226257, "GCCTG":2419682, "GCCCA":2810310, "GCCCT":2825297, "GCCCC":2783900, "GCCCG":748395, "GCCGA":741153, "GCCGT":948635, "GCCGC":883569, "GCCGG":772045, "GCGAA":561674, "GCGAT":545662, "GCGAC":613303, "GCGAG":639460, "GCGTA":506515, "GCGTT":865219, "GCGTC":7110341, "GCGTG":842717, "GCGCA":730388, "GCGCT":890394, "GCGCC":770244, "GCGCG":497821, "GCGGA":512147, "GCGGT":641703, "GCGGC":745119, "GCGGG":992795, "GGAAA":7026493, "GGAAT":2141168, "GGAAC":1988710, "GGAAG":9997149, "GGATA":1582797, "GGATT":1982565, "GGATC":1492142, "GGATG":1960284, "GGACA":3112932, "GGACT":2034793, "GGACC":1718841, "GGACG":753507, "GGAGA":3217168, "GGAGT":1793015, "GGAGC":1651254, "GGAGG":2453564, "GGTAA":1837582, "GGTAT":1853242, "GGTAC":1633831, "GGTAG":1525482, "GGTTA":1872909, "GGTTT":2778044, "GGTTC":1560644, "GGTTG":2066052, "GGTCA":2510208, "GGTCT":2258793, "GGTCC":1567154, "GGTCG":881332, "GGTGA":1945863, "GGTGT":3119061, "GGTGC":1388340, "GGTGG":3502946, "GGCAA":1777281, "GGCAT":1840341, "GGCAC":1663778, "GGCAG":2260383, "GGCTA":2005935, "GGCTT":1825732, "GGCTC":1884276, "GGCTG":2382402, "GGCCA":2446236, "GGCCT":2157625, "GGCCC":1738360, "GGCCG":782911, "GGCGA":592459, "GGCGT":601984, "GGCGC":718814, "GGCGG":1102702, "GGGAA":6017839, "GGGAT":1449200, "GGGAC":1403667, "GGGAG":1901356, "GGGTA":1365272, "GGGTT":1784198, "GGGTC":1179050, "GGGTG":2889860, "GGGCA":1319725, "GGGCT":1304104, "GGGCC":1389385, "GGGCG":947917, "GGGGA":1530916, "GGGGT":2571285, "GGGGC":1385005, "GGGGG":32419169 }, "overrepresented_sequences": { } }, "read1_after_filtering": { "total_reads": 36806176, "total_bases": 2909094510, "q20_bases": 2832334833, "q30_bases": 2698802553, "total_cycles": 86, "quality_curves": { "A":[36.4637,36.4307,36.4339,36.4133,36.4135,36.4139,36.394,36.3834,36.3826,36.3681,36.3264,36.3121,36.3232,36.3191,36.3067,36.289,36.2946,36.2863,36.2901,36.2789,36.2663,36.2574,36.2513,36.2351,36.2433,36.2366,36.2335,36.2135,36.203,36.2068,36.2205,36.2163,36.2142,36.1575,36.1793,36.1396,36.1429,36.1321,36.1516,36.1616,36.1106,36.1213,36.1477,36.0834,36.0847,36.0625,36.0404,36.0247,36.0605,36.0135,36.0254,36.0076,35.9973,35.9605,35.9437,35.9528,35.9503,35.946,35.9261,35.9069,35.8909,35.8753,35.8919,35.8966,35.8691,35.8578,35.8298,35.8346,35.8189,35.7989,35.7777,35.7625,35.759,35.7585,35.7405,35.7379,35.7581,35.7416,35.72,35.6955,35.6689,35.6426,35.6328,35.6221,35.6291,35.5023], "T":[35.9519,35.9265,35.9433,35.9278,35.9226,35.9152,35.903,35.8744,35.853,35.843,35.7569,35.7362,35.7514,35.7531,35.7362,35.719,35.727,35.7064,35.6999,35.7117,35.681,35.6712,35.6645,35.6447,35.6552,35.6374,35.6437,35.6313,35.5983,35.6044,35.5935,35.5793,35.5738,35.5897,35.5516,35.5482,35.5473,35.4946,35.5255,35.4854,35.5551,35.48,35.5038,35.4767,35.4592,35.5149,35.434,35.4068,35.4535,35.3893,35.3402,35.3278,35.3703,35.3468,35.3647,35.3902,35.3854,35.3683,35.3367,35.3221,35.2817,35.2766,35.2667,35.2633,35.2568,35.2268,35.1772,35.2213,35.2152,35.2032,35.1601,35.1494,35.1467,35.1732,35.1122,35.1512,35.1541,35.1488,35.1211,35.1071,35.0577,35.0838,35.0496,35.0279,35.0134,34.9816], "C":[36.3638,36.3883,36.3588,36.3498,36.3416,36.3359,36.3148,36.3127,36.2873,36.2804,36.2376,36.2409,36.2393,36.225,36.2045,36.1965,36.1879,36.19,36.1804,36.1731,36.1617,36.1694,36.1522,36.1429,36.1212,36.1222,36.0959,36.0893,36.0678,36.0791,36.0986,36.0735,36.0564,36.0627,36.055,36.0617,36.0072,36.0207,35.984,35.9881,35.9562,35.9688,35.9657,35.9645,35.9394,35.9403,35.9084,35.9055,35.8649,35.8859,35.8475,35.868,35.8676,35.88,35.8846,35.8733,35.8435,35.8231,35.8058,35.7882,35.7666,35.7523,35.748,35.7594,35.7573,35.7206,35.7155,35.7174,35.691,35.6804,35.655,35.6447,35.641,35.658,35.6192,35.6334,35.6297,35.6173,35.5951,35.578,35.5517,35.5429,35.5412,35.5008,35.5132,35.3939], "G":[35.9649,36.0023,35.988,35.9899,35.9837,35.9849,35.966,35.9666,35.9408,35.9395,35.8521,35.8463,35.857,35.8487,35.8257,35.8153,35.8175,35.8067,35.7981,35.7956,35.7629,35.7634,35.7501,35.7395,35.7342,35.737,35.6908,35.6824,35.6659,35.6537,35.667,35.5867,35.6088,35.6507,35.5943,35.61,35.5772,35.6168,35.54,35.5298,35.5529,35.5138,35.5222,35.5253,35.4178,35.4906,35.4802,35.4796,35.4284,35.4531,35.3562,35.4502,35.413,35.3719,35.3756,35.3968,35.4196,35.4083,35.3847,35.3451,35.3267,35.3212,35.3231,35.3111,35.285,35.2424,35.2114,35.2452,35.2117,35.1652,35.1382,35.1002,35.1233,35.135,35.0865,35.0655,35.1037,35.0957,35.0731,35.0294,35.0044,34.9908,34.974,34.934,34.9396,34.8317], 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"A":[0.31004,0.305259,0.309344,0.311157,0.31333,0.307354,0.309218,0.305734,0.31137,0.309565,0.310323,0.307787,0.308791,0.305669,0.309245,0.308936,0.311373,0.307733,0.309788,0.307894,0.308873,0.307122,0.310068,0.306763,0.310835,0.307296,0.30867,0.309996,0.309929,0.307963,0.308657,0.308624,0.311194,0.306872,0.310348,0.308041,0.310523,0.308313,0.309711,0.308086,0.309577,0.307448,0.31127,0.308534,0.30965,0.307089,0.310161,0.307444,0.310002,0.307968,0.31159,0.307154,0.311339,0.307391,0.312424,0.307862,0.309378,0.308226,0.308249,0.307506,0.308707,0.306512,0.309304,0.305424,0.309294,0.307851,0.310597,0.309381,0.309377,0.309851,0.310884,0.30693,0.312093,0.307965,0.31088,0.309019,0.311217,0.308345,0.309955,0.309778,0.310127,0.308179,0.312136,0.310032,0.314407,0.310589], 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"CCTTC":1472819, "CCTTG":1881416, "CCTCA":1759008, "CCTCT":2160163, "CCTCC":1642234, "CCTCG":569634, "CCTGA":1907472, "CCTGT":2818300, "CCTGC":1605734, "CCTGG":2287311, "CCCAA":1366708, "CCCAT":1360514, "CCCAC":1114638, "CCCAG":1619793, "CCCTA":867515, "CCCTT":1086774, "CCCTC":1219607, "CCCTG":1670869, "CCCCA":1104471, "CCCCT":971181, "CCCCC":726473, "CCCCG":455295, "CCCGA":439701, "CCCGT":445823, "CCCGC":315091, "CCCGG":446886, "CCGAA":637517, "CCGAT":669912, "CCGAC":492188, "CCGAG":635605, "CCGTA":576390, "CCGTT":752455, "CCGTC":621338, "CCGTG":817642, "CCGCA":423171, "CCGCT":470722, "CCGCC":440356, "CCGCG":180086, "CCGGA":479380, "CCGGT":714888, "CCGGC":398066, "CCGGG":655863, "CGAAA":850795, "CGAAT":654287, "CGAAC":477891, "CGAAG":780363, "CGATA":857615, "CGATT":831699, "CGATC":609650, "CGATG":1147272, "CGACA":935785, "CGACT":553237, "CGACC":403801, "CGACG":278958, "CGAGA":1584523, "CGAGT":752494, "CGAGC":585334, "CGAGG":1093116, "CGTAA":794825, "CGTAT":673431, "CGTAC":563574, 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"GGAAC":2296703, "GGAAG":5083275, "GGATA":3698188, "GGATT":2146183, "GGATC":1383145, "GGATG":4641693, "GGACA":4180001, "GGACT":2396395, "GGACC":1258812, "GGACG":997989, "GGAGA":10645785, "GGAGT":3833125, "GGAGC":2239060, "GGAGG":8537704, "GGTAA":3088702, "GGTAT":2899371, "GGTAC":1986017, "GGTAG":5139613, "GGTTA":4328765, "GGTTT":3179468, "GGTTC":1716692, "GGTTG":3564329, "GGTCA":2898744, "GGTCT":2432710, "GGTCC":1366441, "GGTCG":801343, "GGTGA":4139782, "GGTGT":4798371, "GGTGC":1852714, "GGTGG":5048021, "GGCAA":2074932, "GGCAT":1910051, "GGCAC":1492549, "GGCAG":3417615, "GGCTA":2361484, "GGCTT":1602083, "GGCTC":1358493, "GGCTG":3394592, "GGCCA":1958824, "GGCCT":1727978, "GGCCC":1001203, "GGCCG":688690, "GGCGA":851398, "GGCGT":797409, "GGCGC":478896, "GGCGG":972821, "GGGAA":4286660, "GGGAT":3482585, "GGGAC":2537640, "GGGAG":7459474, "GGGTA":3470227, "GGGTT":4389506, "GGGTC":2179244, "GGGTG":4107950, "GGGCA":2117529, "GGGCT":2406158, "GGGCC":1295334, "GGGCG":1001076, "GGGGA":5174500, "GGGGT":4556530, "GGGGC":2020399, "GGGGG":4832869 }, "overrepresented_sequences": { } }, "read2_after_filtering": { "total_reads": 36806176, "total_bases": 2906398863, "q20_bases": 2813082422, "q30_bases": 2660879526, "total_cycles": 86, "quality_curves": { "A":[36.2175,36.2126,36.2303,36.251,36.1833,36.1893,36.1503,36.1529,36.1301,36.1294,36.1364,36.0995,36.1027,36.1084,36.0853,36.0782,36.0768,36.0498,36.0442,36.0261,36.0287,36.0035,36.0177,35.9834,35.973,35.9544,35.9505,35.928,35.9148,35.886,35.9061,35.8782,35.8617,35.848,35.8487,35.8307,35.8169,35.7762,35.7696,35.7246,35.7243,35.7212,35.7268,35.6991,35.6829,35.6414,35.6394,35.6155,35.6144,35.5797,35.5702,35.5348,35.5514,35.4867,35.5157,35.4874,35.5047,35.4792,35.4743,35.4296,35.413,35.3592,35.3664,35.348,35.3668,35.346,35.3399,35.2998,35.2787,35.2857,35.2378,35.218,35.2034,35.175,35.1389,35.1446,35.1053,35.1065,35.087,35.0445,35.0105,35.0401,35.0498,34.975,34.9722,34.713], 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"GC":[0.432494,0.43474,0.426142,0.43341,0.426492,0.435161,0.431265,0.434136,0.425239,0.433616,0.427484,0.429528,0.429161,0.433485,0.424502,0.431995,0.424485,0.430389,0.427707,0.432033,0.425046,0.43332,0.425739,0.431333,0.426886,0.4328,0.423912,0.433961,0.42585,0.430592,0.42757,0.430948,0.424565,0.434947,0.425638,0.430032,0.426403,0.431227,0.424024,0.432639,0.425746,0.430091,0.42461,0.431225,0.422671,0.432387,0.422933,0.42891,0.425609,0.430122,0.422508,0.431253,0.42363,0.427809,0.425461,0.430324,0.422125,0.429935,0.421485,0.426918,0.425059,0.429129,0.420276,0.429308,0.421901,0.428844,0.422168,0.427889,0.420016,0.428059,0.422173,0.426057,0.423012,0.426939,0.419077,0.431237,0.422047,0.426042,0.422925,0.427079,0.421796,0.429086,0.420184,0.425468,0.42219,0.426545] }, "kmer_count": { "AAAAA":7584590, "AAAAT":5397366, "AAAAC":4240867, "AAAAG":3039187, "AAATA":5647064, "AAATT":3271025, "AAATC":3095912, "AAATG":4682387, "AAACA":6437723, "AAACT":3511753, "AAACC":3240493, "AAACG":1189368, 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"CACAA":4815494, "CACAT":6047907, "CACAC":15066849, "CACAG":4913464, "CACTA":5251563, "CACTT":3729951, "CACTC":5996093, "CACTG":4989430, "CACCA":5961082, "CACCT":4560637, "CACCC":4050812, "CACCG":1109218, "CACGA":792419, "CACGT":1175963, "CACGC":1281959, "CACGG":816250, "CAGAA":3416962, "CAGAT":2944076, "CAGAC":4029955, "CAGAG":3399618, "CAGTA":3795758, "CAGTT":3282939, "CAGTC":3898520, "CAGTG":3171723, "CAGCA":4032865, "CAGCT":3452569, "CAGCC":3356358, "CAGCG":906600, "CAGGA":2602647, "CAGGT":2443383, "CAGGC":2069584, "CAGGG":1722002, "CTAAA":3133140, "CTAAT":2764221, "CTAAC":3884911, "CTAAG":1144310, "CTATA":4552907, "CTATT":4015113, "CTATC":4776462, "CTATG":2475922, "CTACA":5749760, "CTACT":6658398, "CTACC":4973454, "CTACG":864848, "CTAGA":1948508, "CTAGT":2293091, "CTAGC":2047820, "CTAGG":1405655, "CTTAA":2383818, "CTTAT":2932034, "CTTAC":2594364, "CTTAG":1322823, "CTTTA":4193580, "CTTTT":5219711, "CTTTC":6323462, "CTTTG":3484529, "CTTCA":4607598, "CTTCT":6494247, "CTTCC":4771466, "CTTCG":783573, "CTTGA":2152113, "CTTGT":2807168, "CTTGC":1764187, "CTTGG":1371648, "CTCAA":3544930, "CTCAT":4505725, "CTCAC":5791015, "CTCAG":3215575, "CTCTA":6930062, "CTCTT":7751180, "CTCTC":31806562, "CTCTG":7905558, "CTCCA":6479525, "CTCCT":9442205, "CTCCC":6905837, "CTCCG":1146744, "CTCGA":652664, "CTCGT":1110239, "CTCGC":1514393, "CTCGG":627428, "CTGAA":3299194, "CTGAT":3096248, "CTGAC":3951450, "CTGAG":2421102, "CTGTA":5534483, "CTGTT":6194538, "CTGTC":8276878, "CTGTG":4070300, "CTGCA":3569910, "CTGCT":4489083, "CTGCC":3390772, "CTGCG":714797, "CTGGA":2564005, "CTGGT":2573383, "CTGGC":2097302, "CTGGG":1614383, "CCAAA":3711283, "CCAAT":2910674, "CCAAC":3609879, "CCAAG":2087855, "CCATA":3531766, "CCATT":4305622, "CCATC":5526731, "CCATG":3186516, "CCACA":5568251, "CCACT":5259124, "CCACC":4936402, "CCACG":1117120, "CCAGA":3199290, "CCAGT":3395705, "CCAGC":2923292, "CCAGG":2328165, "CCTAA":2755419, "CCTAT":3139675, "CCTAC":4333476, "CCTAG":1745775, "CCTTA":2743655, "CCTTT":4690854, "CCTTC":4995494, "CCTTG":2217744, "CCTCA":4803343, "CCTCT":11167771, "CCTCC":7866867, "CCTCG":1051730, "CCTGA":2878738, "CCTGT":4749027, "CCTGC":2985501, "CCTGG":2365861, "CCCAA":3054570, "CCCAT":3702744, "CCCAC":4187152, "CCCAG":3340318, "CCCTA":4230630, "CCCTT":3861042, "CCCTC":7918649, "CCCTG":3787992, "CCCCA":4348608, "CCCCT":5451642, "CCCCC":4245718, "CCCCG":1128020, "CCCGA":626409, "CCCGT":973996, "CCCGC":820179, "CCCGG":648530, "CCGAA":552308, "CCGAT":737038, "CCGAC":775103, "CCGAG":653758, "CCGTA":765621, "CCGTT":976224, "CCGTC":1214663, "CCGTG":764579, "CCGCA":715276, "CCGCT":963130, "CCGCC":1018069, "CCGCG":241454, "CCGGA":542623, "CCGGT":657313, "CCGGC":607819, "CCGGG":521344, "CGAAA":705064, "CGAAT":574933, "CGAAC":567404, "CGAAG":460890, "CGATA":682964, "CGATT":711414, "CGATC":637544, "CGATG":735800, "CGACA":1013900, "CGACT":748049, "CGACC":858075, "CGACG":340688, "CGAGA":818085, "CGAGT":505629, "CGAGC":518919, "CGAGG":575604, "CGTAA":658693, "CGTAT":715113, "CGTAC":703641, "CGTAG":651247, "CGTTA":961640, "CGTTT":1402104, "CGTTC":1076618, "CGTTG":905317, "CGTCA":1116907, "CGTCT":1427994, "CGTCC":982166, "CGTCG":333776, "CGTGA":656221, "CGTGT":1081818, "CGTGC":658539, "CGTGG":634241, "CGCAA":713151, "CGCAT":678614, "CGCAC":937433, "CGCAG":734176, "CGCTA":812911, "CGCTT":760617, "CGCTC":1774397, "CGCTG":1120833, "CGCCA":940333, "CGCCT":843026, "CGCCC":1061881, "CGCCG":339176, "CGCGA":196728, "CGCGT":227296, "CGCGC":331031, "CGCGG":201489, "CGGAA":779247, "CGGAT":478753, "CGGAC":599842, "CGGAG":684892, "CGGTA":637669, "CGGTT":604393, "CGGTC":655826, "CGGTG":698440, "CGGCA":651138, "CGGCT":696206, "CGGCC":695338, "CGGCG":303900, "CGGGA":504116, "CGGGT":380666, "CGGGC":409599, "CGGGG":447297, "GAAAA":3325668, "GAAAT":3055493, "GAAAC":2601969, "GAAAG":2044596, "GAATA":2331871, "GAATT":2093386, "GAATC":1528460, "GAATG":2265921, "GAACA":3132567, "GAACT":1906712, "GAACC":1766859, "GAACG":796750, "GAAGA":2392778, "GAAGT":1834202, "GAAGC":1400463, "GAAGG":1540233, "GATAA":1813043, "GATAT":2222426, "GATAC":1611831, "GATAG":1216855, "GATTA":1891657, "GATTT":2897870, "GATTC":1624074, "GATTG":1754137, "GATCA":1976585, "GATCT":1953253, "GATCC":1388862, "GATCG":746541, "GATGA":2402390, "GATGT":2625023, "GATGC":1545659, "GATGG":1644122, "GACAA":2790866, "GACAT":3164710, "GACAC":3318682, "GACAG":3139308, "GACTA":2094803, "GACTT":2003172, "GACTC":2122499, "GACTG":2599144, "GACCA":2837204, "GACCT":2021012, "GACCC":2124934, "GACCG":579192, "GACGA":820488, "GACGT":755447, "GACGC":579720, "GACGG":621658, "GAGAA":2611750, "GAGAT":1991003, "GAGAC":2290702, "GAGAG":3447861, "GAGTA":1432854, "GAGTT":1649849, "GAGTC":1346208, "GAGTG":1689739, "GAGCA":1797321, "GAGCT":1733087, "GAGCC":1478647, "GAGCG":659023, "GAGGA":2276112, "GAGGT":1486649, "GAGGC":1313479, "GAGGG":1282711, "GTAAA":2921937, "GTAAT":2480261, "GTAAC":2041336, "GTAAG":1181368, "GTATA":2933820, "GTATT":3364962, "GTATC":1992712, "GTATG":2084171, "GTACA":3048726, "GTACT":2257614, "GTACC":1922023, "GTACG":547863, "GTAGA":1938097, "GTAGT":1853410, "GTAGC":1545289, "GTAGG":1200437, "GTTAA":2420145, "GTTAT":2749388, "GTTAC":2343146, "GTTAG":1609604, "GTTTA":3129095, "GTTTT":4819561, "GTTTC":3300506, "GTTTG":3088175, "GTTCA":2842086, "GTTCT":3681941, "GTTCC":2305661, "GTTCG":479851, "GTTGA":2358787, "GTTGT":3263968, "GTTGC":1622298, "GTTGG":1500072, "GTCAA":2417482, "GTCAT":3201569, "GTCAC":2808710, "GTCAG":2499976, "GTCTA":2418633, "GTCTT":2922017, "GTCTC":5317299, "GTCTG":3932933, "GTCCA":2581746, "GTCCT":3086618, "GTCCC":2482971, "GTCCG":535263, "GTCGA":495790, "GTCGT":735811, "GTCGC":531672, "GTCGG":467041, "GTGAA":2223720, "GTGAT":1964902, "GTGAC":1850571, "GTGAG":1481675, "GTGTA":2600171, "GTGTT":3875198, "GTGTC":2575615, "GTGTG":5124051, "GTGCA":2010508, "GTGCT":1966104, "GTGCC":1489682, "GTGCG":549613, "GTGGA":1888464, "GTGGT":1868538, "GTGGC":1380173, "GTGGG":1141614, "GCAAA":2178193, "GCAAT":1790297, "GCAAC":1825930, "GCAAG":1365915, "GCATA":1692367, "GCATT":2515630, "GCATC":1972428, "GCATG":1872819, "GCACA":2875194, "GCACT":2037023, "GCACC":1841902, "GCACG":612603, "GCAGA":2167201, "GCAGT":2018274, "GCAGC":2286308, "GCAGG":1661657, "GCTAA":1710636, "GCTAT":1976825, "GCTAC":2285606, "GCTAG":1383842, "GCTTA":1167393, "GCTTT":2894189, "GCTTC":2133701, "GCTTG":1346800, "GCTCA":2108656, "GCTCT":3753699, "GCTCC":2214870, "GCTCG":574308, "GCTGA":2112473, "GCTGT":3250995, "GCTGC":2380938, "GCTGG":1673136, "GCCAA":2121758, "GCCAT":2532056, "GCCAC":2257469, "GCCAG":1842398, "GCCTA":1666638, "GCCTT":2211466, "GCCTC":2538976, "GCCTG":1905769, "GCCCA":2092981, "GCCCT":2230562, "GCCCC":1981044, "GCCCG":500327, "GCCGA":546090, "GCCGT":603074, "GCCGC":611841, "GCCGG":474899, "GCGAA":440307, "GCGAT":429660, "GCGAC":464395, "GCGAG":447580, "GCGTA":392957, "GCGTT":685829, "GCGTC":595771, "GCGTG":604800, "GCGCA":544275, "GCGCT":679205, "GCGCC":513818, "GCGCG":247516, "GCGGA":363007, "GCGGT":463760, "GCGGC":434243, "GCGGG":337086, "GGAAA":2421008, "GGAAT":1718141, "GGAAC":1571249, "GGAAG":1687301, "GGATA":1266026, "GGATT":1599225, "GGATC":1190642, "GGATG":1551785, "GGACA":2426346, "GGACT":1609967, "GGACC":1369626, "GGACG":560340, "GGAGA":2314897, "GGAGT":1396448, "GGAGC":1288303, "GGAGG":1705755, "GGTAA":1462021, "GGTAT":1496232, "GGTAC":1316537, "GGTAG":1120914, "GGTTA":1488318, "GGTTT":2107675, "GGTTC":1240044, "GGTTG":1403690, "GGTCA":1988190, "GGTCT":1783051, "GGTCC":1247440, "GGTCG":410860, "GGTGA":1498733, "GGTGT":2065217, "GGTGC":1082610, "GGTGG":1340375, "GGCAA":1379937, "GGCAT":1475430, "GGCAC":1303816, "GGCAG":1628625, "GGCTA":1606767, "GGCTT":1463620, "GGCTC":1475927, "GGCTG":1856862, "GGCCA":1888528, "GGCCT":1715153, "GGCCC":1276378, "GGCCG":505829, "GGCGA":448240, "GGCGT":424663, "GGCGC":437764, "GGCGG":462750, "GGGAA":1436867, "GGGAT":1129618, "GGGAC":1081604, "GGGAG":1302096, "GGGTA":999905, "GGGTT":1165014, "GGGTC":892727, "GGGTG":1105435, "GGGCA":1004281, "GGGCT":1000990, "GGGCC":992187, "GGGCG":342719, "GGGGA":1037936, "GGGGT":890526, "GGGGC":694167, "GGGGG":1046353 }, "overrepresented_sequences": { } }, "command": "fastp --in1 lib_213491_sample_1703788_S150_L002_R1_001.fastq.gz --in2 lib_213491_sample_1703788_S150_L002_R2_001.fastq.gz --detect_adapter_for_pe --trim_poly_g --trim_poly_x --trim_front1 15 --trim_front2 15 --thread 50 --html /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213491_sample_1703788_S150_L002.fastp-trim.report.html --json /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213491_sample_1703788_S150_L002.fastp-trim.report.json --out1 /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213491_sample_1703788_S150_L002_R1_001.fastp-trim.fq.gz --out2 /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213491_sample_1703788_S150_L002_R2_001.fastp-trim.fq.gz " }