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"GC":[0.681353,0.514185,0.425452,0.429024,0.386276,0.373935,0.310003,0.393757,0.443643,0.339367,0.471845,0.462852,0.404066,0.399774,0.397222,0.401279,0.410889,0.405059,0.409902,0.405713,0.414326,0.405358,0.406773,0.40714,0.40693,0.406306,0.408773,0.403442,0.411663,0.403268,0.408891,0.402505,0.408723,0.403872,0.407903,0.408498,0.410404,0.405374,0.407348,0.411029,0.410483,0.411155,0.413017,0.408007,0.406096,0.410585,0.409108,0.408372,0.412869,0.408758,0.411628,0.410507,0.416509,0.41379,0.418474,0.413477,0.411788,0.413536,0.41365,0.408608,0.414282,0.413212,0.415102,0.416393,0.417207,0.412371,0.417099,0.416663,0.414815,0.415203,0.417362,0.415882,0.418986,0.417922,0.418982,0.419308,0.422258,0.420158,0.422764,0.420957,0.421947,0.423452,0.425702,0.421706,0.424872,0.425383,0.426199,0.425744,0.429873,0.426351,0.429017,0.42936,0.430004,0.431709,0.433788,0.431675,0.435003,0.43438,0.4349,0.436129,0.439436] }, "kmer_count": { "AAAAA":17519421, "AAAAT":7715447, "AAAAC":5754188, "AAAAG":7567863, 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"ACGTT":1123271, "ACGTC":3433854, "ACGTG":982243, "ACGCA":772471, "ACGCT":785752, "ACGCC":483368, "ACGCG":254840, "ACGGA":1070391, "ACGGT":783220, "ACGGC":783976, "ACGGG":795896, "AGAAA":7658221, "AGAAT":3046213, "AGAAC":2328218, "AGAAG":5797710, "AGATA":3332445, "AGATT":2756586, "AGATC":6228944, "AGATG":3798501, "AGACA":4097143, "AGACT":2043017, "AGACC":1085685, "AGACG":1348592, "AGAGA":8916725, "AGAGT":2947615, "AGAGC":6055556, "AGAGG":5361575, "AGTAA":2962406, "AGTAT":2334578, "AGTAC":1631971, "AGTAG":2512103, "AGTTA":2463136, "AGTTT":3430943, "AGTTC":1465032, "AGTTG":2689358, "AGTCA":3923388, "AGTCT":1913115, "AGTCC":1272922, "AGTCG":790340, "AGTGA":3854375, "AGTGT":3701336, "AGTGC":1910668, "AGTGG":2595400, "AGCAA":2856823, "AGCAT":2434664, "AGCAC":5152024, "AGCAG":4003472, "AGCTA":1521052, "AGCTT":2251997, "AGCTC":1679446, "AGCTG":3128254, "AGCCA":1881848, "AGCCT":1404195, "AGCCC":879465, "AGCCG":768368, "AGCGA":1036663, "AGCGT":1011977, "AGCGC":624771, "AGCGG":970283, "AGGAA":4838424, "AGGAT":3591059, "AGGAC":2418839, "AGGAG":6077231, "AGGTA":1940656, "AGGTT":2441568, "AGGTC":1520707, "AGGTG":2924285, "AGGCA":2302661, "AGGCT":1819403, "AGGCC":1173744, "AGGCG":867317, "AGGGA":3368726, "AGGGT":2414591, "AGGGC":1436074, "AGGGG":3210070, "TAAAA":7598393, "TAAAT":5300648, "TAAAC":3131430, "TAAAG":3959551, "TAATA":3874965, "TAATT":3125292, "TAATC":1687476, "TAATG":3388627, "TAACA":3152729, "TAACT":1929230, "TAACC":952536, "TAACG":798149, "TAAGA":2916247, "TAAGT":2003572, "TAAGC":1171863, "TAAGG":1987648, "TATAA":3258794, "TATAT":4280928, "TATAC":1735805, "TATAG":1781994, "TATTA":3398576, "TATTT":4978802, "TATTC":1907007, "TATTG":2543021, "TATCA":2224436, "TATCT":1956993, "TATCC":968899, "TATCG":607429, "TATGA":2530430, "TATGT":3427135, "TATGC":1427577, "TATGG":1688279, "TACAA":3302955, "TACAT":3099463, "TACAC":1874266, "TACAG":3052040, "TACTA":1351128, "TACTT":2092333, "TACTC":1073376, "TACTG":2401294, "TACCA":1217681, "TACCT":918755, "TACCC":481181, 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"CATCA":2845536, "CATCT":2309859, "CATCC":1229560, "CATCG":689434, "CATGA":2775755, "CATGT":3120583, "CATGC":1677400, "CATGG":1992204, "CACAA":3287307, "CACAT":2867240, "CACAC":7019701, "CACAG":3192681, "CACTA":1293408, "CACTT":3197181, "CACTC":1224776, "CACTG":2471457, "CACCA":1796739, "CACCT":1319627, "CACCC":675028, "CACCG":637798, "CACGA":682647, "CACGT":3638389, "CACGC":558771, "CACGG":754058, "CAGAA":3778485, "CAGAT":4203170, "CAGAC":2357811, "CAGAG":4563565, "CAGTA":2469231, "CAGTT":2642066, "CAGTC":3172471, "CAGTG":3348741, "CAGCA":3374467, "CAGCT":2620202, "CAGCC":1424609, "CAGCG":1141848, "CAGGA":3182418, "CAGGT":2241496, "CAGGC":1382372, "CAGGG":1990145, "CTAAA":2603498, "CTAAT":1560301, "CTAAC":973563, "CTAAG":1055740, "CTATA":1480540, "CTATT":1655842, "CTATC":735737, "CTATG":1274348, "CTACA":1862025, "CTACT":1216867, "CTACC":532511, "CTACG":476760, "CTAGA":1269072, "CTAGT":1079843, "CTAGC":615659, "CTAGG":570407, "CTTAA":2095288, "CTTAT":1511736, "CTTAC":921618, "CTTAG":1053414, "CTTTA":2816752, "CTTTT":3829385, "CTTTC":1786200, "CTTTG":2850474, "CTTCA":2400673, "CTTCT":2170049, "CTTCC":2136982, "CTTCG":450206, "CTTGA":2812755, "CTTGT":2256258, "CTTGC":1196129, "CTTGG":1590796, "CTCAA":1931905, "CTCAT":1850947, "CTCAC":1195341, "CTCAG":1944432, "CTCTA":1322720, "CTCTT":1933221, "CTCTC":1652842, "CTCTG":2578846, "CTCCA":3462645, "CTCCT":1775132, "CTCCC":844323, "CTCCG":712218, "CTCGA":561684, "CTCGT":926780, "CTCGC":448653, "CTCGG":690138, "CTGAA":5535239, "CTGAT":2654975, "CTGAC":1811716, "CTGAG":2827950, "CTGTA":2643847, "CTGTT":3240258, "CTGTC":1967672, "CTGTG":3377348, "CTGCA":2974116, "CTGCT":2975162, "CTGCC":1241466, "CTGCG":739592, "CTGGA":2654258, "CTGGT":2259675, "CTGGC":1437938, "CTGGG":1911537, "CCAAA":2472620, "CCAAT":1259116, "CCAAC":1177365, "CCAAG":1246945, "CCATA":1209254, "CCATT":1542733, "CCATC":1166578, "CCATG":1565878, "CCACA":1926674, "CCACT":1211691, "CCACC":891060, "CCACG":644990, "CCAGA":2235749, "CCAGT":2894798, 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"GC":[0.39795,0.40743,0.405508,0.406535,0.406421,0.410917,0.406142,0.407339,0.404118,0.407698,0.403303,0.40573,0.404291,0.408685,0.404336,0.40599,0.403517,0.40574,0.404921,0.408664,0.405307,0.406923,0.40588,0.407632,0.407733,0.41096,0.407685,0.409202,0.408166,0.405794,0.406501,0.407074,0.404103,0.408379,0.40631,0.410289,0.410016,0.412463,0.409238,0.413927,0.408628,0.408232,0.408256,0.408953,0.405647,0.408388,0.408335,0.408907,0.409973,0.41124,0.407749,0.409504,0.410549,0.409174,0.408635,0.409814,0.406595,0.409322,0.407836,0.40826,0.408142,0.41052,0.407974,0.409687,0.407031,0.407342,0.408833,0.410573,0.405412,0.408276,0.408311,0.408027,0.406977,0.410498,0.406011,0.408177,0.40849,0.409394,0.410833,0.412015,0.408609,0.4118,0.409382,0.408869,0.409508,0.411229] }, "kmer_count": { "AAAAA":13721174, "AAAAT":6222946, "AAAAC":4758218, "AAAAG":5919007, "AAATA":6169520, "AAATT":3163576, "AAATC":2606679, "AAATG":4951662, "AAACA":6450403, "AAACT":3134319, "AAACC":1754110, "AAACG":1178029, 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"CACAT":2456982, "CACAC":3298459, "CACAG":2649721, "CACTA":1095305, "CACTT":1764743, "CACTC":1075003, "CACTG":2145868, "CACCA":1556427, "CACCT":1151375, "CACCC":607138, "CACCG":555476, "CACGA":545748, "CACGT":718131, "CACGC":491841, "CACGG":628020, "CAGAA":3093824, "CAGAT":2287473, "CAGAC":2003415, "CAGAG":3591098, "CAGTA":1970115, "CAGTT":2189178, "CAGTC":1485971, "CAGTG":2766357, "CAGCA":2853320, "CAGCT":2262496, "CAGCC":1262261, "CAGCG":970039, "CAGGA":2577283, "CAGGT":1875812, "CAGGC":1190055, "CAGGG":1623042, "CTAAA":2189446, "CTAAT":1306957, "CTAAC":833519, "CTAAG":877583, "CTATA":1190821, "CTATT":1369319, "CTATC":630509, "CTATG":1065764, "CTACA":1564856, "CTACT":1027496, "CTACC":463705, "CTACG":403741, "CTAGA":905333, "CTAGT":909454, "CTAGC":529817, "CTAGG":482436, "CTTAA":1750320, "CTTAT":1252815, "CTTAC":781392, "CTTAG":888661, "CTTTA":2350716, "CTTTT":3175149, "CTTTC":1532937, "CTTTG":2366030, "CTTCA":2063403, "CTTCT":1862392, "CTTCC":1027541, "CTTCG":371361, "CTTGA":1678264, 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"AGGCT":1212972, "AGGCC":972037, "AGGCG":421181, "AGGGA":1659672, "AGGGT":674597, "AGGGC":710452, "AGGGG":590457, "TAAAA":4403986, "TAAAT":3661721, "TAAAC":2665862, "TAAAG":2401207, "TAATA":2909627, "TAATT":3036705, "TAATC":1891386, "TAATG":2317316, "TAACA":2781408, "TAACT":1965126, "TAACC":1393421, "TAACG":636981, "TAAGA":2169501, "TAAGT":1572685, "TAAGC":958532, "TAAGG":797116, "TATAA":2574289, "TATAT":3758825, "TATAC":1701576, "TATAG":1224598, "TATTA":3166443, "TATTT":5984001, "TATTC":2214617, "TATTG":2321091, "TATCA":2246460, "TATCT":2557601, "TATCC":1578675, "TATCG":543401, "TATGA":1966583, "TATGT":2456329, "TATGC":1211748, "TATGG":1049148, "TACAA":2647927, "TACAT":3072585, "TACAC":2396998, "TACAG":2276244, "TACTA":1726342, "TACTT":2341804, "TACTC":1457921, "TACTG":2085850, "TACCA":1500071, "TACCT":1523146, "TACCC":1111446, "TACCG":370536, "TACGA":525572, "TACGT":705087, "TACGC":381505, "TACGG":403220, "TAGAA":1623241, "TAGAT":1813535, "TAGAC":1009096, "TAGAG":1172361, 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"CACAT":3439331, "CACAC":6437740, "CACAG":2899621, "CACTA":1783039, "CACTT":2707288, "CACTC":2385996, "CACTG":2706241, "CACCA":2736610, "CACCT":2249404, "CACCC":1713264, "CACCG":875428, "CACGA":578021, "CACGT":805914, "CACGC":870570, "CACGG":599153, "CAGAA":2452481, "CAGAT":2698916, "CAGAC":2222995, "CAGAG":2337173, "CAGTA":2028717, "CAGTT":2460387, "CAGTC":2058601, "CAGTG":2625853, "CAGCA":3772321, "CAGCT":2642336, "CAGCC":2004540, "CAGCG":923174, "CAGGA":1869632, "CAGGT":1443199, "CAGGC":1215834, "CAGGG":984782, "CTAAA":2195373, "CTAAT":1799866, "CTAAC":1373500, "CTAAG":901278, "CTATA":1489240, "CTATT":1902303, "CTATC":1502542, "CTATG":1194509, "CTACA":2247316, "CTACT":1971921, "CTACC":1313607, "CTACG":624834, "CTAGA":974120, "CTAGT":825042, "CTAGC":657996, "CTAGG":398755, "CTTAA":2119185, "CTTAT":2014204, "CTTAC":1409698, "CTTAG":867593, "CTTTA":3094000, "CTTTT":5434985, "CTTTC":3149747, "CTTTG":2915790, "CTTCA":3238399, "CTTCT":4194038, "CTTCC":2626256, "CTTCG":676673, 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"CCTTG":1452663, "CCTCA":2882898, "CCTCT":3985898, "CCTCC":3786097, "CCTCG":857480, "CCTGA":1917051, "CCTGT":2170082, "CCTGC":1875655, "CCTGG":1267998, "CCCAA":1624593, "CCCAT":1514648, "CCCAC":1650889, "CCCAG":1576894, "CCCTA":1225169, "CCCTT":2048530, "CCCTC":2840680, "CCCTG":1593024, "CCCCA":1818955, "CCCCT":2191891, "CCCCC":2313768, "CCCCG":771988, "CCCGA":520869, "CCCGT":597754, "CCCGC":614883, "CCCGG":513116, "CCGAA":433285, "CCGAT":461538, "CCGAC":674951, "CCGAG":557642, "CCGTA":449905, "CCGTT":688749, "CCGTC":973530, "CCGTG":615736, "CCGCA":590341, "CCGCT":756365, "CCGCC":814100, "CCGCG":281362, "CCGGA":470629, "CCGGT":427816, "CCGGC":578185, "CCGGG":353510, "CGAAA":606488, "CGAAT":346539, "CGAAC":360204, "CGAAG":367138, "CGATA":467411, "CGATT":487310, "CGATC":405722, "CGATG":612341, "CGACA":784572, "CGACT":638051, "CGACC":705457, "CGACG":357146, "CGAGA":588323, "CGAGT":489015, "CGAGC":559389, "CGAGG":491414, "CGTAA":513251, "CGTAT":548062, "CGTAC":523002, "CGTAG":407301, "CGTTA":646608, "CGTTT":1130339, "CGTTC":673140, "CGTTG":608631, "CGTCA":925320, "CGTCT":1085462, "CGTCC":807273, "CGTCG":1050680, "CGTGA":523921, "CGTGT":1490283, "CGTGC":473393, "CGTGG":578817, "CGCAA":500932, "CGCAT":554516, "CGCAC":667479, "CGCAG":658231, "CGCTA":416581, "CGCTT":687756, "CGCTC":858373, "CGCTG":943333, "CGCCA":764261, "CGCCT":711571, "CGCCC":784334, "CGCCG":507517, "CGCGA":155083, "CGCGT":215561, "CGCGC":200864, "CGCGG":239798, "CGGAA":1087028, "CGGAT":431748, "CGGAC":510299, "CGGAG":633001, "CGGTA":347515, "CGGTT":490336, "CGGTC":425205, "CGGTG":709703, "CGGCA":621934, "CGGCT":642650, "CGGCC":583206, "CGGCG":355516, "CGGGA":386979, "CGGGT":291606, "CGGGC":310735, "CGGGG":361786, "GAAAA":3328868, "GAAAT":2362051, "GAAAC":2016782, "GAAAG":2294111, "GAATA":1645898, "GAATT":1566623, "GAATC":1094594, "GAATG":1526963, "GAACA":1994187, "GAACT":1247911, "GAACC":1155711, "GAACG":530566, "GAAGA":2528213, "GAAGT":1458158, "GAAGC":1236481, "GAAGG":1046866, "GATAA":1575041, "GATAT":1750600, "GATAC":972313, "GATAG":666748, "GATTA":1464044, "GATTT":2521191, "GATTC":1170304, "GATTG":1205894, "GATCA":1705867, "GATCT":1452848, "GATCC":1000179, "GATCG":1162655, "GATGA":2014772, "GATGT":1944349, "GATGC":1248882, "GATGG":1076828, "GACAA":1989541, "GACAT":2065568, "GACAC":1741814, "GACAG":2407521, "GACTA":960363, "GACTT":1653003, "GACTC":1339475, "GACTG":1502731, "GACCA":1567672, "GACCT":1259782, "GACCC":972786, "GACCG":468708, "GACGA":682731, "GACGT":650087, "GACGC":616755, "GACGG":580045, "GAGAA":1910704, "GAGAT":1542196, "GAGAC":1346729, "GAGAG":1580606, "GAGTA":940162, "GAGTT":1467736, "GAGTC":1025389, "GAGTG":1790508, "GAGCA":1528833, "GAGCT":1444257, "GAGCC":1030900, "GAGCG":1198630, "GAGGA":1736686, "GAGGT":969473, "GAGGC":971013, "GAGGG":807128, "GTAAA":2274359, "GTAAT":1715546, "GTAAC":1222629, "GTAAG":822819, "GTATA":1468497, "GTATT":2233147, "GTATC":1161475, "GTATG":1220383, "GTACA":1856008, "GTACT":1375104, "GTACC":721414, "GTACG":387091, "GTAGA":1441168, "GTAGT":1102762, "GTAGC":803097, "GTAGG":1192939, "GTTAA":2562677, "GTTAT":1770757, "GTTAC":1185577, "GTTAG":867019, "GTTTA":2601044, "GTTTT":4546459, "GTTTC":2343023, "GTTTG":2717036, "GTTCA":2014593, "GTTCT":1847722, "GTTCC":1286709, "GTTCG":376249, "GTTGA":1562804, "GTTGT":2174051, "GTTGC":1183722, "GTTGG":1011223, "GTCAA":1656587, "GTCAT":1986538, "GTCAC":1588435, "GTCAG":1584773, "GTCTA":972616, "GTCTT":2073964, "GTCTC":2012789, "GTCTG":1980228, "GTCCA":1628984, "GTCCT":1883987, "GTCCC":1106806, "GTCCG":486893, "GTCGA":410152, "GTCGT":1242195, "GTCGC":569005, "GTCGG":455128, "GTGAA":1779902, "GTGAT":1562080, "GTGAC":1397631, "GTGAG":1096014, "GTGTA":2602767, "GTGTT":3375165, "GTGTC":1649082, "GTGTG":3295321, "GTGCA":1639320, "GTGCT":1496360, "GTGCC":972130, "GTGCG":413891, "GTGGA":1327397, "GTGGT":1299893, "GTGGC":978341, "GTGGG":699250, "GCAAA":1984357, "GCAAT":1218535, "GCAAC":1446193, "GCAAG":1048984, "GCATA":1090172, "GCATT":1897373, "GCATC":1529182, "GCATG":1434710, "GCACA":2084030, "GCACT":1570361, "GCACC":1181641, "GCACG":438815, "GCAGA":1946198, "GCAGT":2044964, "GCAGC":2213439, "GCAGG":1271710, "GCTAA":1234004, "GCTAT":1010820, "GCTAC":1025946, "GCTAG":543350, "GCTTA":959873, "GCTTT":2636006, "GCTTC":1758519, "GCTTG":1032988, "GCTCA":1798046, "GCTCT":1929943, "GCTCC":1584970, "GCTCG":498876, "GCTGA":1809174, "GCTGT":2229336, "GCTGC":2111136, "GCTGG":1211724, "GCCAA":1474665, "GCCAT":1538596, "GCCAC":1284178, "GCCAG":1255737, "GCCTA":644569, "GCCTT":1546304, "GCCTC":1612718, "GCCTG":1202685, "GCCCA":1097853, "GCCCT":1151867, "GCCCC":1162863, "GCCCG":429329, "GCCGA":467116, "GCCGT":662921, "GCCGC":580703, "GCCGG":443507, "GCGAA":282045, "GCGAT":341373, "GCGAC":471692, "GCGAG":412854, "GCGTA":313481, "GCGTT":623591, "GCGTC":1235557, "GCGTG":505151, "GCGCA":408629, "GCGCT":507699, "GCGCC":494813, "GCGCG":162310, "GCGGA":350781, "GCGGT":327195, "GCGGC":437688, "GCGGG":283506, "GGAAA":2539216, "GGAAT":1040692, "GGAAC":935679, "GGAAG":1742215, "GGATA":834690, "GGATT":1105282, "GGATC":831850, "GGATG":1096901, "GGACA":1507371, "GGACT":1091937, "GGACC":804098, "GGACG":554684, "GGAGA":1493273, "GGAGT":926534, "GGAGC":1052799, "GGAGG":1246851, "GGTAA":837352, "GGTAT":814963, "GGTAC":558157, "GGTAG":490124, "GGTTA":836552, "GGTTT":1728370, "GGTTC":869360, "GGTTG":906477, "GGTCA":1114308, "GGTCT":943879, "GGTCC":678658, "GGTCG":415765, "GGTGA":1061412, "GGTGT":1216067, "GGTGC":842066, "GGTGG":923741, "GGCAA":996875, "GGCAT":929230, "GGCAC":802081, "GGCAG":1119737, "GGCTA":653208, "GGCTT":1211102, "GGCTC":1065864, "GGCTG":1268253, "GGCCA":1062861, "GGCCT":981325, "GGCCC":704466, "GGCCG":509770, "GGCGA":358603, "GGCGT":421427, "GGCGC":331033, "GGCGG":379255, "GGGAA":1554643, "GGGAT":688453, "GGGAC":688466, "GGGAG":782271, "GGGTA":440583, "GGGTT":719498, "GGGTC":509834, "GGGTG":641248, "GGGCA":661054, "GGGCT":733673, "GGGCC":605341, "GGGCG":292352, "GGGGA":589791, "GGGGT":431121, "GGGGC":491837, "GGGGG":617723 }, "overrepresented_sequences": { } }, "command": "fastp --in1 lib_213477_sample_1703769_S51_L001_R1_001.fastq.gz --in2 lib_213477_sample_1703769_S51_L001_R2_001.fastq.gz --detect_adapter_for_pe --trim_poly_g --trim_poly_x --trim_front1 15 --trim_front2 15 --thread 50 --html /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213477_sample_1703769_S51_L001.fastp-trim.report.html --json /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213477_sample_1703769_S51_L001.fastp-trim.report.json --out1 /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213477_sample_1703769_S51_L001_R1_001.fastp-trim.fq.gz --out2 /mmfs1/gscratch/scrubbed/samwhite/outputs/20260806-Fastp-FastQC-MultiQC-dittman-grc-rnaseq/lib_213477_sample_1703769_S51_L001_R2_001.fastp-trim.fq.gz " }