[2024-11-19 17:50:15,570] multiqc [DEBUG ] This is MultiQC v1.14 [2024-11-19 17:50:15,571] multiqc [DEBUG ] Command used: /home/sam/programs/mambaforge/bin/multiqc -f 101112C14_hisat.out 101112C4_hisat.out 101112C9_hisat.out 101112H14_hisat.out 101112H4_hisat.out 101112H9_hisat.out 101112L14_hisat.out 101112L4_hisat.out 101112L9_hisat.out 101112M14_hisat.out 101112M4_hisat.out 101112M9_hisat.out 123C14_hisat.out 123C4_hisat.out 123C9_hisat.out 123H14_hisat.out 123H4_hisat.out 123H9_hisat.out 123L14_hisat.out 123L4_hisat.out 123L9_hisat.out 123M4_hisat.out 123M9_hisat.out 131415C14_hisat.out 131415C4_hisat.out 131415C9_hisat.out 131415H14_hisat.out 131415H4_hisat.out 131415H9_hisat.out 131415L14_hisat.out 131415L4_hisat.out 131415L9_hisat.out 131415M14_hisat.out 131415M4_hisat.out 131415M9_hisat.out 13M14_hisat.out 456C4_hisat.out 456H4_hisat.out 456H9_hisat.out 456L14_hisat.out 456L4_hisat.out 456L9_hisat.out 456M14_hisat.out 456M4_hisat.out 456M9_hisat.out 45C14_hisat.out 45C9_hisat.out 45H14_hisat.out 67C9_hisat.out 6C14_hisat.out 789C4_hisat.out 789H14_hisat.out 789H4_hisat.out 789H9_hisat.out 789L14_hisat.out 789L4_hisat.out 789L9_hisat.out 789M14_hisat.out 789M4_hisat.out 7C14_hisat.out 89C14_hisat.out 89C9_hisat.out 89M9_hisat.out [2024-11-19 17:50:16,433] multiqc [WARNING] MultiQC Version v1.25.1 now available! [2024-11-19 17:50:16,433] multiqc [DEBUG ] Working dir : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat [2024-11-19 17:50:16,433] multiqc [DEBUG ] Template : default [2024-11-19 17:50:16,433] multiqc [DEBUG ] Running Python 3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:08:06) [GCC 11.3.0] [2024-11-19 17:50:16,434] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, hifiasm, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, gopeaks, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dragen_fastqc, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, umitools, bbmap, bismark, biscuit, diamond, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, cellranger, snpsplit, odgi, pangolin, nextclade, humid, kat, leehom, adapterRemoval, bbduk, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, motus, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, filtlong, prinseqplusplus, pychopper, porechop, pycoqc, minionqc, anglerfish, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2024-11-19 17:50:16,434] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpalw997dl [2024-11-19 17:50:16,941] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/101112C14_hisat.out [2024-11-19 17:50:16,941] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/101112C4_hisat.out [2024-11-19 17:50:16,941] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/101112C9_hisat.out [2024-11-19 17:50:16,942] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/101112H14_hisat.out [2024-11-19 17:50:16,942] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/101112H4_hisat.out [2024-11-19 17:50:16,942] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/101112H9_hisat.out [2024-11-19 17:50:16,942] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/101112L14_hisat.out [2024-11-19 17:50:16,942] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/101112L4_hisat.out [2024-11-19 17:50:16,942] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/101112L9_hisat.out [2024-11-19 17:50:16,942] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/101112M14_hisat.out [2024-11-19 17:50:16,942] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/101112M4_hisat.out [2024-11-19 17:50:16,942] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/101112M9_hisat.out [2024-11-19 17:50:16,942] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/123C14_hisat.out [2024-11-19 17:50:16,943] multiqc [INFO ] Search path : 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/media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/789L4_hisat.out [2024-11-19 17:50:16,947] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/789L9_hisat.out [2024-11-19 17:50:16,947] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/789M14_hisat.out [2024-11-19 17:50:16,947] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/789M4_hisat.out [2024-11-19 17:50:16,947] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/7C14_hisat.out [2024-11-19 17:50:16,947] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/89C14_hisat.out [2024-11-19 17:50:16,947] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/89C9_hisat.out [2024-11-19 17:50:16,947] multiqc [INFO ] Search path : /media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/89M9_hisat.out [2024-11-19 17:50:17,277] multiqc [DEBUG ] Summary of files that were skipped by the search: [] [2024-11-19 17:50:18,185] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.7.1 [2024-11-19 17:50:18,185] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.7.1 [2024-11-19 17:50:18,186] multiqc [DEBUG ] No samples found: custom_content [2024-11-19 17:50:18,204] multiqc.modules.bowtie2.bowtie2 [INFO ] Found 63 reports [2024-11-19 17:50:18,217] multiqc [INFO ] Compressing plot data [2024-11-19 17:50:18,226] multiqc [WARNING] Deleting : multiqc_report.html (-f was specified) [2024-11-19 17:50:18,226] multiqc [WARNING] Deleting : multiqc_data (-f was specified) [2024-11-19 17:50:18,226] multiqc [INFO ] Report : multiqc_report.html [2024-11-19 17:50:18,226] multiqc [INFO ] Data : multiqc_data [2024-11-19 17:50:18,226] multiqc [DEBUG ] Moving data file from '/tmp/tmpalw997dl/multiqc_data' to '/media/4TB_JPG_ext/stanja/gitprojects/coral-embryo-ecotox/output/04_align/hisat/multiqc_data' [2024-11-19 17:50:18,323] multiqc [INFO ] MultiQC complete