---
title: "Step 8: Gene Ontology (GO) Terms Functional Enrichment"
subtitle: "Using `DESeq2`"
author: "Sarah Tanja"
date: 11/20/2024
format:
  gfm: default  
toc: true
toc-depth: 3
link-external-icon: true
link-external-newwindow: true
reference-location: margin
citation-location: margin
---

Read in annotation file. 

Downloaded functional annotation (version 3) from: http://cyanophora.rutgers.edu/montipora/Montipora_capitata_HIv3.genes.EggNog_results.txt.gz (EggNog) and http://cyanophora.rutgers.edu/montipora/Montipora_capitata_HIv3.genes.KEGG_results.txt.gz (KEGG). 
Unzipped on desktop. I then removed the # in #query in the first column, otherwise it does not read in column names.  
