[2021-01-10 00:08:18,580] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2021-01-10 00:08:18,583] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/yaaminiv/.multiqc_config.yaml [2021-01-10 00:08:18,583] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-01-10 00:08:18,583] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/. [2021-01-10 00:08:23,742] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2021-01-10 00:08:23,742] multiqc [INFO ] This is MultiQC v1.8 [2021-01-10 00:08:23,743] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/. [2021-01-10 00:08:23,743] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore [2021-01-10 00:08:23,743] multiqc [INFO ] Template : default [2021-01-10 00:08:23,743] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2021-01-10 00:08:23,743] multiqc [INFO ] Searching : /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore [2021-01-10 00:08:23,744] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2021-01-10 00:08:23,744] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpyguhz32z [2021-01-10 00:08:24,363] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/./multiqc_data [2021-01-10 00:08:24,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-746498.out [2021-01-10 00:08:24,523] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-746498.out [2021-01-10 00:08:24,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R2_val_2_fastqc.html [2021-01-10 00:08:24,992] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_23_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:24,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_23_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:25,013] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1_val_1.fq.gz [2021-01-10 00:08:25,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_23_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:25,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_23_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:25,288] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1_val_1.fq.gz [2021-01-10 00:08:25,288] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1_val_1_fastqc.html [2021-01-10 00:08:25,310] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_9_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:25,312] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_9_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:25,330] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R2_val_2.fq.gz [2021-01-10 00:08:25,369] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-739757.out [2021-01-10 00:08:25,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1_val_1_fastqc.html [2021-01-10 00:08:25,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R2_val_2.fq.gz [2021-01-10 00:08:25,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_22_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:25,413] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded 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Ignoring file as matched an ignore pattern: zr3644_19_R1_val_1.fq.gz [2021-01-10 00:08:25,633] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: multiqc_report.html [2021-01-10 00:08:25,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R1_val_1.fq.gz [2021-01-10 00:08:25,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R2_val_2.fq.gz [2021-01-10 00:08:25,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_3_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:25,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_3_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:25,769] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R1_val_1_fastqc.html [2021-01-10 00:08:25,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R2_val_2_fastqc.html [2021-01-10 00:08:25,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1_val_1_fastqc.html [2021-01-10 00:08:25,901] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_13_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:25,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_13_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:25,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_2_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:25,941] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_2_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:25,956] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1_val_1.fq.gz [2021-01-10 00:08:26,059] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1_val_1.fq.gz [2021-01-10 00:08:26,079] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_21_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:26,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_21_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:26,098] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R2_val_2_fastqc.html [2021-01-10 00:08:26,098] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1_val_1.fq.gz [2021-01-10 00:08:26,098] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1_val_1.fq.gz [2021-01-10 00:08:26,121] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1_val_1.fq.gz [2021-01-10 00:08:26,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_24_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:26,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_24_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:26,257] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R2_val_2_fastqc.html [2021-01-10 00:08:26,280] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_5_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:26,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_5_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:26,329] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_2_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:26,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_2_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:26,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1_val_1_fastqc.html [2021-01-10 00:08:26,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_1_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:26,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_1_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:26,409] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R2_val_2_fastqc.html [2021-01-10 00:08:26,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R2_val_2.fq.gz [2021-01-10 00:08:26,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1_val_1.fq.gz [2021-01-10 00:08:26,447] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_14_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:26,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_14_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:26,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1_val_1.fq.gz [2021-01-10 00:08:26,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1_val_1_fastqc.html [2021-01-10 00:08:26,468] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1_val_1_fastqc.html [2021-01-10 00:08:26,468] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1_val_1_fastqc.html [2021-01-10 00:08:26,481] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1_val_1.fq.gz [2021-01-10 00:08:26,524] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_18_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:26,527] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_18_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:26,572] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 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00:08:27,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1_val_1_fastqc.html [2021-01-10 00:08:27,056] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R2_val_2.fq.gz [2021-01-10 00:08:27,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1_val_1_fastqc.html [2021-01-10 00:08:27,105] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_22_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:27,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_22_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:27,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R2_val_2_fastqc.html [2021-01-10 00:08:27,178] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_8_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:27,181] multiqc [DEBUG ] File ignored 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zr3644_17_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:28,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_17_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:28,099] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R2_val_2.fq.gz [2021-01-10 00:08:28,144] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_10_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:28,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_10_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:28,187] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_18_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_18_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,265] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_11_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:28,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_11_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:28,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R2_val_2_fastqc.html [2021-01-10 00:08:28,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1_val_1.fq.gz [2021-01-10 00:08:28,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1_val_1_fastqc.html [2021-01-10 00:08:28,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R2_val_2_fastqc.html [2021-01-10 00:08:28,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1_val_1_fastqc.html [2021-01-10 00:08:28,326] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1_val_1.fq.gz [2021-01-10 00:08:28,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_16_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,356] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_16_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_20_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,392] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_20_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1_val_1_fastqc.html [2021-01-10 00:08:28,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_7_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:28,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_7_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:28,480] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R2_val_2_fastqc.html [2021-01-10 00:08:28,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_5_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_5_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,555] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R2_val_2_fastqc.html [2021-01-10 00:08:28,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R2_val_2.fq.gz [2021-01-10 00:08:28,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R2_val_2_fastqc.html [2021-01-10 00:08:28,587] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_15_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:28,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_15_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:28,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_4_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,630] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_4_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_9_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_9_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,716] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R2_val_2_fastqc.html [2021-01-10 00:08:28,716] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1_val_1_fastqc.html [2021-01-10 00:08:28,717] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1_val_1_fastqc.html [2021-01-10 00:08:28,717] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1_val_1_fastqc.html [2021-01-10 00:08:28,727] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R2_val_2.fq.gz [2021-01-10 00:08:28,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_14_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_14_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,770] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R2_val_2.fq.gz [2021-01-10 00:08:28,823] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_20_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:28,826] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_20_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:28,846] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1_val_1.fq.gz [2021-01-10 00:08:28,846] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R2_val_2.fq.gz [2021-01-10 00:08:28,879] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_7_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_7_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:28,900] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1_val_1.fq.gz [2021-01-10 00:08:29,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-729302.out [2021-01-10 00:08:29,030] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-729302.out [2021-01-10 00:08:29,397] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_4_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:29,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_4_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:29,424] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1_val_1_fastqc.html [2021-01-10 00:08:29,424] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R2_val_2_fastqc.html [2021-01-10 00:08:29,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R2_val_2_fastqc.html [2021-01-10 00:08:29,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1_val_1.fq.gz [2021-01-10 00:08:29,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R2_val_2.fq.gz [2021-01-10 00:08:29,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_19_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:29,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_19_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:29,465] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R2_val_2.fq.gz [2021-01-10 00:08:29,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_19_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:29,487] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_19_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:29,501] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R2_val_2.fq.gz [2021-01-10 00:08:29,501] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R2_val_2.fq.gz [2021-01-10 00:08:29,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_6_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:29,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_6_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:29,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_21_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:29,554] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_21_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:29,585] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_11_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:29,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_11_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:29,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1_val_1.fq.gz [2021-01-10 00:08:29,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1_val_1.fq.gz [2021-01-10 00:08:29,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1_val_1_fastqc.html [2021-01-10 00:08:29,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_1_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:29,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_1_R1.fq.gz_trimming_report.txt [2021-01-10 00:08:29,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R2_val_2_fastqc.html [2021-01-10 00:08:29,724] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_16_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:29,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_16_R2.fq.gz_trimming_report.txt [2021-01-10 00:08:29,745] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R2_val_2_fastqc.html [2021-01-10 00:08:29,745] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R2_val_2.fq.gz [2021-01-10 00:08:29,746] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R2_val_2.fq.gz [2021-01-10 00:08:34,612] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2021-01-10 00:08:34,624] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2021-01-10 00:08:34,646] multiqc [DEBUG ] No samples found: custom_content [2021-01-10 00:08:34,655] multiqc [DEBUG ] No samples found: conpair [2021-01-10 00:08:34,727] multiqc [DEBUG ] No samples found: peddy [2021-01-10 00:08:34,752] multiqc [DEBUG ] No samples found: methylQA [2021-01-10 00:08:34,778] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-01-10 00:08:34,892] multiqc [DEBUG ] No samples found: qualimap [2021-01-10 00:08:34,918] multiqc [DEBUG ] No samples found: preseq [2021-01-10 00:08:34,936] multiqc [DEBUG ] No samples found: quast [2021-01-10 00:08:34,984] multiqc [DEBUG ] No samples found: qorts [2021-01-10 00:08:35,016] multiqc [DEBUG ] No samples found: rna_seqc [2021-01-10 00:08:35,048] multiqc [DEBUG ] No samples found: rsem [2021-01-10 00:08:35,128] multiqc [DEBUG ] No samples found: rseqc [2021-01-10 00:08:35,140] multiqc [DEBUG ] No samples found: busco [2021-01-10 00:08:35,166] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-01-10 00:08:35,189] multiqc [DEBUG ] No samples found: disambiguate [2021-01-10 00:08:35,276] multiqc [DEBUG ] No samples found: supernova [2021-01-10 00:08:35,541] multiqc [DEBUG ] No samples found: deeptools [2021-01-10 00:08:35,562] multiqc [DEBUG ] No samples found: sargasso [2021-01-10 00:08:35,585] multiqc [DEBUG ] No samples found: verifybamid [2021-01-10 00:08:35,662] multiqc [DEBUG ] No samples found: mirtrace [2021-01-10 00:08:35,748] multiqc [DEBUG ] No samples found: happy [2021-01-10 00:08:35,832] multiqc [DEBUG ] No samples found: homer [2021-01-10 00:08:35,851] multiqc [DEBUG ] No samples found: macs2 [2021-01-10 00:08:35,860] multiqc [DEBUG ] No samples found: theta2 [2021-01-10 00:08:35,886] multiqc [DEBUG ] No samples found: snpeff [2021-01-10 00:08:35,932] multiqc [DEBUG ] No samples found: gatk [2021-01-10 00:08:35,941] multiqc [DEBUG ] No samples found: htseq [2021-01-10 00:08:35,963] multiqc [DEBUG ] No samples found: bcftools [2021-01-10 00:08:35,973] multiqc [DEBUG ] No samples found: featureCounts [2021-01-10 00:08:35,983] multiqc [DEBUG ] No samples found: fgbio [2021-01-10 00:08:35,991] multiqc [DEBUG ] No samples found: dedup [2021-01-10 00:08:36,106] multiqc [DEBUG ] No samples found: damageprofiler [2021-01-10 00:08:36,262] multiqc [DEBUG ] No samples found: biobambam2 [2021-01-10 00:08:36,293] multiqc [DEBUG ] No samples found: mtnucratio [2021-01-10 00:08:36,297] multiqc [DEBUG ] No samples found: picard [2021-01-10 00:08:36,322] multiqc [DEBUG ] No samples found: prokka [2021-01-10 00:08:36,330] multiqc [DEBUG ] No samples found: samblaster [2021-01-10 00:08:36,382] multiqc [DEBUG ] No samples found: samtools [2021-01-10 00:08:36,429] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-01-10 00:08:36,442] multiqc [DEBUG ] No samples found: bamtools [2021-01-10 00:08:36,451] multiqc [DEBUG ] No samples found: jellyfish [2021-01-10 00:08:36,466] multiqc [DEBUG ] No samples found: vcftools [2021-01-10 00:08:36,502] multiqc [DEBUG ] No samples found: longranger [2021-01-10 00:08:36,537] multiqc [DEBUG ] No samples found: stacks [2021-01-10 00:08:36,599] multiqc [DEBUG ] No samples found: bbmap [2021-01-10 00:08:36,624] multiqc [DEBUG ] No samples found: bismark [2021-01-10 00:08:36,642] multiqc [DEBUG ] No samples found: biscuit [2021-01-10 00:08:36,681] multiqc [DEBUG ] No samples found: hicexplorer [2021-01-10 00:08:36,718] multiqc [DEBUG ] No samples found: hicup [2021-01-10 00:08:36,741] multiqc [DEBUG ] No samples found: hicpro [2021-01-10 00:08:36,750] multiqc [DEBUG ] No samples found: salmon [2021-01-10 00:08:36,772] multiqc [DEBUG ] No samples found: kallisto [2021-01-10 00:08:36,818] multiqc [DEBUG ] No samples found: slamdunk [2021-01-10 00:08:36,843] multiqc [DEBUG ] No samples found: star [2021-01-10 00:08:36,863] multiqc [DEBUG ] No samples found: hisat2 [2021-01-10 00:08:36,895] multiqc [DEBUG ] No samples found: tophat [2021-01-10 00:08:36,920] multiqc [DEBUG ] No samples found: bowtie2 [2021-01-10 00:08:36,954] multiqc [DEBUG ] No samples found: bowtie1 [2021-01-10 00:08:36,963] multiqc [DEBUG ] No samples found: kat [2021-01-10 00:08:36,971] multiqc [DEBUG ] No samples found: leehom [2021-01-10 00:08:37,005] multiqc [DEBUG ] No samples found: adapterRemoval [2021-01-10 00:08:37,015] multiqc [DEBUG ] No samples found: clipandmerge [2021-01-10 00:08:37,183] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_23_R2 [2021-01-10 00:08:37,184] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_23_R1 [2021-01-10 00:08:37,186] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_9_R2 [2021-01-10 00:08:37,187] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_22_R1 [2021-01-10 00:08:37,188] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_12_R2 [2021-01-10 00:08:37,190] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_17_R1 [2021-01-10 00:08:37,191] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_3_R1 [2021-01-10 00:08:37,193] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_13_R2 [2021-01-10 00:08:37,194] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_2_R1 [2021-01-10 00:08:37,195] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_21_R1 [2021-01-10 00:08:37,197] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_24_R2 [2021-01-10 00:08:37,198] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_5_R2 [2021-01-10 00:08:37,200] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_2_R2 [2021-01-10 00:08:37,201] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_1_R2 [2021-01-10 00:08:37,203] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_14_R2 [2021-01-10 00:08:37,204] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_18_R2 [2021-01-10 00:08:37,205] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_1_R1 [2021-01-10 00:08:37,207] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_1_R2 [2021-01-10 00:08:37,209] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_2_R1 [2021-01-10 00:08:37,211] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_2_R2 [2021-01-10 00:08:37,213] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_3_R1 [2021-01-10 00:08:37,215] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_3_R2 [2021-01-10 00:08:37,217] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_4_R1 [2021-01-10 00:08:37,219] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_4_R2 [2021-01-10 00:08:37,221] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_5_R1 [2021-01-10 00:08:37,223] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_5_R2 [2021-01-10 00:08:37,225] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_6_R1 [2021-01-10 00:08:37,227] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_6_R2 [2021-01-10 00:08:37,229] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_7_R1 [2021-01-10 00:08:37,231] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_7_R2 [2021-01-10 00:08:37,233] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_8_R1 [2021-01-10 00:08:37,235] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_8_R2 [2021-01-10 00:08:37,237] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_9_R1 [2021-01-10 00:08:37,239] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_9_R2 [2021-01-10 00:08:37,241] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_10_R1 [2021-01-10 00:08:37,243] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_10_R2 [2021-01-10 00:08:37,245] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_11_R1 [2021-01-10 00:08:37,247] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_11_R2 [2021-01-10 00:08:37,250] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_12_R1 [2021-01-10 00:08:37,251] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_12_R2 [2021-01-10 00:08:37,254] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_13_R1 [2021-01-10 00:08:37,255] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_13_R2 [2021-01-10 00:08:37,258] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_14_R1 [2021-01-10 00:08:37,259] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_14_R2 [2021-01-10 00:08:37,261] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_15_R1 [2021-01-10 00:08:37,263] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_15_R2 [2021-01-10 00:08:37,266] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_16_R1 [2021-01-10 00:08:37,267] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_16_R2 [2021-01-10 00:08:37,270] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_17_R1 [2021-01-10 00:08:37,271] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_17_R2 [2021-01-10 00:08:37,274] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_18_R1 [2021-01-10 00:08:37,275] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_18_R2 [2021-01-10 00:08:37,278] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_19_R1 [2021-01-10 00:08:37,279] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_19_R2 [2021-01-10 00:08:37,282] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_20_R1 [2021-01-10 00:08:37,283] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_20_R2 [2021-01-10 00:08:37,286] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_21_R1 [2021-01-10 00:08:37,287] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_21_R2 [2021-01-10 00:08:37,290] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_22_R1 [2021-01-10 00:08:37,291] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_22_R2 [2021-01-10 00:08:37,294] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_23_R1 [2021-01-10 00:08:37,295] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_23_R2 [2021-01-10 00:08:37,298] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_24_R1 [2021-01-10 00:08:37,299] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_24_R2 [2021-01-10 00:08:37,301] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_3_R2 [2021-01-10 00:08:37,303] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_22_R2 [2021-01-10 00:08:37,304] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_8_R2 [2021-01-10 00:08:37,306] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_6_R1 [2021-01-10 00:08:37,307] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_12_R1 [2021-01-10 00:08:37,308] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_15_R1 [2021-01-10 00:08:37,310] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_13_R1 [2021-01-10 00:08:37,311] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_10_R1 [2021-01-10 00:08:37,313] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_24_R1 [2021-01-10 00:08:37,314] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_8_R1 [2021-01-10 00:08:37,315] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_17_R2 [2021-01-10 00:08:37,317] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_10_R2 [2021-01-10 00:08:37,318] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_18_R1 [2021-01-10 00:08:37,320] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_11_R2 [2021-01-10 00:08:37,321] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_16_R1 [2021-01-10 00:08:37,322] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_20_R1 [2021-01-10 00:08:37,324] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_7_R2 [2021-01-10 00:08:37,325] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_5_R1 [2021-01-10 00:08:37,327] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_15_R2 [2021-01-10 00:08:37,328] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_4_R1 [2021-01-10 00:08:37,330] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_9_R1 [2021-01-10 00:08:37,331] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_14_R1 [2021-01-10 00:08:37,332] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_20_R2 [2021-01-10 00:08:37,334] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_7_R1 [2021-01-10 00:08:37,335] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_1_R1 [2021-01-10 00:08:37,337] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_1_R2 [2021-01-10 00:08:37,339] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_2_R1 [2021-01-10 00:08:37,340] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_2_R2 [2021-01-10 00:08:37,342] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_3_R1 [2021-01-10 00:08:37,344] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_3_R2 [2021-01-10 00:08:37,346] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_4_R1 [2021-01-10 00:08:37,347] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_4_R2 [2021-01-10 00:08:37,349] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_5_R1 [2021-01-10 00:08:37,351] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_5_R2 [2021-01-10 00:08:37,353] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_6_R1 [2021-01-10 00:08:37,354] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_6_R2 [2021-01-10 00:08:37,356] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_7_R1 [2021-01-10 00:08:37,358] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_7_R2 [2021-01-10 00:08:37,360] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_8_R1 [2021-01-10 00:08:37,361] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_8_R2 [2021-01-10 00:08:37,363] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_9_R1 [2021-01-10 00:08:37,365] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_9_R2 [2021-01-10 00:08:37,367] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_10_R1 [2021-01-10 00:08:37,368] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_10_R2 [2021-01-10 00:08:37,370] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_11_R1 [2021-01-10 00:08:37,372] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_11_R2 [2021-01-10 00:08:37,374] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_12_R1 [2021-01-10 00:08:37,375] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_12_R2 [2021-01-10 00:08:37,377] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_13_R1 [2021-01-10 00:08:37,379] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_13_R2 [2021-01-10 00:08:37,381] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_14_R1 [2021-01-10 00:08:37,382] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_14_R2 [2021-01-10 00:08:37,384] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_15_R1 [2021-01-10 00:08:37,386] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_15_R2 [2021-01-10 00:08:37,388] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_16_R1 [2021-01-10 00:08:37,389] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_16_R2 [2021-01-10 00:08:37,391] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_17_R1 [2021-01-10 00:08:37,393] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_17_R2 [2021-01-10 00:08:37,395] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_18_R1 [2021-01-10 00:08:37,396] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_18_R2 [2021-01-10 00:08:37,398] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_19_R1 [2021-01-10 00:08:37,400] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_19_R2 [2021-01-10 00:08:37,402] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_20_R1 [2021-01-10 00:08:37,403] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_20_R2 [2021-01-10 00:08:37,405] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_21_R1 [2021-01-10 00:08:37,407] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_21_R2 [2021-01-10 00:08:37,409] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_22_R1 [2021-01-10 00:08:37,410] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_22_R2 [2021-01-10 00:08:37,412] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_4_R2 [2021-01-10 00:08:37,414] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_19_R1 [2021-01-10 00:08:37,415] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_19_R2 [2021-01-10 00:08:37,416] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_6_R2 [2021-01-10 00:08:37,418] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_21_R2 [2021-01-10 00:08:37,419] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_11_R1 [2021-01-10 00:08:37,421] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_1_R1 [2021-01-10 00:08:37,422] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_16_R2 [2021-01-10 00:08:37,423] multiqc.modules.cutadapt.cutadapt [INFO ] Found 48 reports [2021-01-10 00:08:37,452] multiqc [DEBUG ] No samples found: flexbar [2021-01-10 00:08:37,524] multiqc [DEBUG ] No samples found: trimmomatic [2021-01-10 00:08:37,554] multiqc [DEBUG ] No samples found: skewer [2021-01-10 00:08:37,563] multiqc [DEBUG ] No samples found: sortmerna [2021-01-10 00:08:37,573] multiqc [DEBUG ] No samples found: biobloomtools [2021-01-10 00:08:37,595] multiqc [DEBUG ] No samples found: fastq_screen [2021-01-10 00:08:37,637] multiqc [DEBUG ] No samples found: afterqc [2021-01-10 00:08:37,670] multiqc [DEBUG ] No samples found: fastp [2021-01-10 00:08:56,689] multiqc.modules.fastqc.fastqc [INFO ] Found 48 reports [2021-01-10 00:08:57,703] multiqc [DEBUG ] No samples found: minionqc [2021-01-10 00:08:57,758] multiqc [DEBUG ] No samples found: mosdepth [2021-01-10 00:08:57,781] multiqc [DEBUG ] No samples found: clusterflow [2021-01-10 00:08:57,811] multiqc [DEBUG ] No samples found: bcl2fastq [2021-01-10 00:08:57,871] multiqc [DEBUG ] No samples found: interop [2021-01-10 00:08:57,948] multiqc [DEBUG ] No samples found: flash [2021-01-10 00:08:58,108] multiqc [DEBUG ] No samples found: seqyclean [2021-01-10 00:08:58,235] multiqc [INFO ] Compressing plot data [2021-01-10 00:08:59,251] multiqc [WARNING] Previous MultiQC output found! Adjusting filenames.. [2021-01-10 00:08:59,251] multiqc [WARNING] Use -f or --force to overwrite existing reports instead [2021-01-10 00:08:59,251] multiqc [INFO ] Report : multiqc_report_1.html [2021-01-10 00:08:59,251] multiqc [INFO ] Data : multiqc_data_1 [2021-01-10 00:08:59,349] multiqc [DEBUG ] Moving data file from '/tmp/tmpyguhz32z/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/multiqc_data_1' [2021-01-10 00:08:59,476] multiqc [DEBUG ] Moving data file from '/tmp/tmpyguhz32z/multiqc_data/multiqc_cutadapt.txt' to '/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/multiqc_data_1' [2021-01-10 00:08:59,477] multiqc [DEBUG ] Moving data file from '/tmp/tmpyguhz32z/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/multiqc_data_1' [2021-01-10 00:08:59,479] multiqc [DEBUG ] Moving data file from '/tmp/tmpyguhz32z/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/multiqc_data_1' [2021-01-10 00:08:59,480] multiqc [DEBUG ] Moving data file from '/tmp/tmpyguhz32z/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/multiqc_data_1' [2021-01-10 00:08:59,481] multiqc [DEBUG ] Moving data file from '/tmp/tmpyguhz32z/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/multiqc_data_1' [2021-01-10 00:09:01,443] multiqc [INFO ] MultiQC complete