[2021-01-09 23:53:13,478] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2021-01-09 23:53:13,480] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/yaaminiv/.multiqc_config.yaml [2021-01-09 23:53:13,480] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-01-09 23:53:13,481] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/. [2021-01-09 23:53:18,670] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2021-01-09 23:53:18,670] multiqc [INFO ] This is MultiQC v1.8 [2021-01-09 23:53:18,671] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/. [2021-01-09 23:53:18,671] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore [2021-01-09 23:53:18,672] multiqc [INFO ] Template : default [2021-01-09 23:53:18,672] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2021-01-09 23:53:18,672] multiqc [INFO ] Searching : /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore [2021-01-09 23:53:18,673] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2021-01-09 23:53:18,673] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpj4vr33cv [2021-01-09 23:53:19,295] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-746498.out [2021-01-09 23:53:19,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-746498.out [2021-01-09 23:53:19,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R2_val_2_fastqc.html [2021-01-09 23:53:19,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_23_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:19,671] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_23_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:19,681] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R1_val_1.fq.gz [2021-01-09 23:53:19,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_23_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:19,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_23_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:19,719] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R1_val_1.fq.gz [2021-01-09 23:53:19,719] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R1_val_1_fastqc.html [2021-01-09 23:53:19,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_9_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:19,761] multiqc [DEBUG ] File ignored by longranger/invocation because 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23:53:19,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_13_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,060] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_2_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:20,062] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_2_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:20,080] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1_val_1.fq.gz [2021-01-09 23:53:20,081] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R1_val_1.fq.gz [2021-01-09 23:53:20,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_21_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:20,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_21_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:20,119] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R2_val_2_fastqc.html [2021-01-09 23:53:20,119] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1_val_1.fq.gz [2021-01-09 23:53:20,119] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R1_val_1.fq.gz [2021-01-09 23:53:20,120] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1_val_1.fq.gz [2021-01-09 23:53:20,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_24_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_24_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,140] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R2_val_2_fastqc.html [2021-01-09 23:53:20,158] multiqc [DEBUG ] File 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pattern filesize limit: zr3644_1_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R2_val_2_fastqc.html [2021-01-09 23:53:20,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R2_val_2.fq.gz [2021-01-09 23:53:20,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1_val_1.fq.gz [2021-01-09 23:53:20,261] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_14_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_14_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1_val_1.fq.gz [2021-01-09 23:53:20,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1_val_1_fastqc.html [2021-01-09 23:53:20,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R1_val_1_fastqc.html [2021-01-09 23:53:20,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1_val_1_fastqc.html [2021-01-09 23:53:20,274] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1_val_1.fq.gz [2021-01-09 23:53:20,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_18_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,300] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_18_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,310] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R2_val_2.fq.gz [2021-01-09 23:53:20,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-740304.out [2021-01-09 23:53:20,376] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-740304.out [2021-01-09 23:53:20,748] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1_val_1.fq.gz [2021-01-09 23:53:20,749] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R1_val_1_fastqc.html [2021-01-09 23:53:20,765] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_3_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_3_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_24_R2_val_2_fastqc.html [2021-01-09 23:53:20,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R1_val_1_fastqc.html [2021-01-09 23:53:20,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_15_R2_val_2.fq.gz [2021-01-09 23:53:20,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1_val_1_fastqc.html [2021-01-09 23:53:20,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_22_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,793] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_22_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,803] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R2_val_2_fastqc.html [2021-01-09 23:53:20,819] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_8_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,820] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_8_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:20,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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[DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_13_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:20,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R2_val_2.fq.gz [2021-01-09 23:53:20,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1_val_1.fq.gz [2021-01-09 23:53:20,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R1_val_1.fq.gz [2021-01-09 23:53:20,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1_val_1.fq.gz [2021-01-09 23:53:20,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_2_R2_val_2_fastqc.html [2021-01-09 23:53:20,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R1_val_1_fastqc.html [2021-01-09 23:53:20,936] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_16_R2_val_2.fq.gz [2021-01-09 23:53:20,972] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_10_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:20,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_10_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:20,992] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R2_val_2_fastqc.html [2021-01-09 23:53:20,992] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R2_val_2_fastqc.html [2021-01-09 23:53:21,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_24_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_24_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,051] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_8_R1.fq.gz_trimming_report.txt [2021-01-09 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Ignoring file as matched an ignore pattern: zr3644_17_R2_val_2.fq.gz [2021-01-09 23:53:21,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_10_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:21,124] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_10_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:21,149] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_18_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,150] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_18_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,179] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_11_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:21,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_11_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:21,191] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R2_val_2_fastqc.html [2021-01-09 23:53:21,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1_val_1.fq.gz [2021-01-09 23:53:21,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_12_R1_val_1_fastqc.html [2021-01-09 23:53:21,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R2_val_2_fastqc.html [2021-01-09 23:53:21,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R1_val_1_fastqc.html [2021-01-09 23:53:21,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1_val_1.fq.gz [2021-01-09 23:53:21,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_16_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_16_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_20_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_20_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_3_R1_val_1_fastqc.html [2021-01-09 23:53:21,301] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_7_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:21,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_7_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:21,317] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R2_val_2_fastqc.html [2021-01-09 23:53:21,393] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_5_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,395] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_5_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,413] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R2_val_2_fastqc.html [2021-01-09 23:53:21,413] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_20_R2_val_2.fq.gz [2021-01-09 23:53:21,414] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_8_R2_val_2_fastqc.html [2021-01-09 23:53:21,429] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_15_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:21,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_15_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:21,461] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_4_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,463] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_4_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_9_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,493] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_9_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,505] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R2_val_2_fastqc.html [2021-01-09 23:53:21,505] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1_val_1_fastqc.html [2021-01-09 23:53:21,505] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_14_R1_val_1_fastqc.html [2021-01-09 23:53:21,505] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_1_R1_val_1_fastqc.html [2021-01-09 23:53:21,505] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R2_val_2.fq.gz [2021-01-09 23:53:21,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_14_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_14_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R2_val_2.fq.gz [2021-01-09 23:53:21,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_20_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:21,555] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_20_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:21,566] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_17_R1_val_1.fq.gz [2021-01-09 23:53:21,566] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_18_R2_val_2.fq.gz [2021-01-09 23:53:21,585] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_7_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_7_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R1_val_1.fq.gz [2021-01-09 23:53:21,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-729302.out [2021-01-09 23:53:21,630] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-729302.out [2021-01-09 23:53:21,940] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_4_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:21,941] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_4_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:21,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_6_R1_val_1_fastqc.html [2021-01-09 23:53:21,952] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_9_R2_val_2_fastqc.html [2021-01-09 23:53:21,952] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_23_R2_val_2_fastqc.html [2021-01-09 23:53:21,952] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R1_val_1.fq.gz [2021-01-09 23:53:21,952] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R2_val_2.fq.gz [2021-01-09 23:53:21,968] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_19_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,970] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_19_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:21,979] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_4_R2_val_2.fq.gz [2021-01-09 23:53:22,017] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_19_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:22,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_19_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:22,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_22_R2_val_2.fq.gz [2021-01-09 23:53:22,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_10_R2_val_2.fq.gz [2021-01-09 23:53:22,058] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_6_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:22,060] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_6_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:22,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_21_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:22,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_21_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:22,133] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_11_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:22,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_11_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:22,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_13_R1_val_1.fq.gz [2021-01-09 23:53:22,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R1_val_1.fq.gz [2021-01-09 23:53:22,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_5_R1_val_1_fastqc.html [2021-01-09 23:53:22,166] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_1_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:22,168] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_1_R1.fq.gz_trimming_report.txt [2021-01-09 23:53:22,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_11_R2_val_2_fastqc.html [2021-01-09 23:53:22,202] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: zr3644_16_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:22,204] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: zr3644_16_R2.fq.gz_trimming_report.txt [2021-01-09 23:53:22,215] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_19_R2_val_2_fastqc.html [2021-01-09 23:53:22,215] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_21_R2_val_2.fq.gz [2021-01-09 23:53:22,215] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: zr3644_7_R2_val_2.fq.gz [2021-01-09 23:53:26,350] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2021-01-09 23:53:26,392] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2021-01-09 23:53:26,453] multiqc [DEBUG ] No samples found: custom_content [2021-01-09 23:53:26,505] multiqc [DEBUG ] No samples found: conpair [2021-01-09 23:53:26,633] multiqc [DEBUG ] No samples found: peddy [2021-01-09 23:53:26,699] multiqc [DEBUG ] No samples found: methylQA [2021-01-09 23:53:26,727] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-01-09 23:53:26,847] multiqc [DEBUG ] No samples found: qualimap [2021-01-09 23:53:26,880] multiqc [DEBUG ] No samples found: preseq [2021-01-09 23:53:26,923] multiqc [DEBUG ] No samples found: quast [2021-01-09 23:53:26,934] multiqc [DEBUG ] No samples found: qorts [2021-01-09 23:53:27,081] multiqc [DEBUG ] No samples found: rna_seqc [2021-01-09 23:53:27,150] multiqc [DEBUG ] No samples found: rsem [2021-01-09 23:53:27,300] multiqc [DEBUG ] No samples found: rseqc [2021-01-09 23:53:27,342] multiqc [DEBUG ] No samples found: busco [2021-01-09 23:53:27,402] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-01-09 23:53:27,439] multiqc [DEBUG ] No samples found: disambiguate [2021-01-09 23:53:27,465] multiqc [DEBUG ] No samples found: supernova [2021-01-09 23:53:27,554] multiqc [DEBUG ] No samples found: deeptools [2021-01-09 23:53:27,577] multiqc [DEBUG ] No samples found: sargasso [2021-01-09 23:53:27,614] multiqc [DEBUG ] No samples found: verifybamid [2021-01-09 23:53:27,628] multiqc [DEBUG ] No samples found: mirtrace [2021-01-09 23:53:27,646] multiqc [DEBUG ] No samples found: happy [2021-01-09 23:53:27,682] multiqc [DEBUG ] No samples found: homer [2021-01-09 23:53:27,690] multiqc [DEBUG ] No samples found: macs2 [2021-01-09 23:53:27,696] multiqc [DEBUG ] No samples found: theta2 [2021-01-09 23:53:27,717] multiqc [DEBUG ] No samples found: snpeff [2021-01-09 23:53:27,776] multiqc [DEBUG ] No samples found: gatk [2021-01-09 23:53:27,784] multiqc [DEBUG ] No samples found: htseq [2021-01-09 23:53:27,820] multiqc [DEBUG ] No samples found: bcftools [2021-01-09 23:53:27,828] multiqc [DEBUG ] No samples found: featureCounts [2021-01-09 23:53:27,837] multiqc [DEBUG ] No samples found: fgbio [2021-01-09 23:53:27,844] multiqc [DEBUG ] No samples found: dedup [2021-01-09 23:53:27,858] multiqc [DEBUG ] No samples found: damageprofiler [2021-01-09 23:53:28,011] multiqc [DEBUG ] No samples found: biobambam2 [2021-01-09 23:53:28,034] multiqc [DEBUG ] No samples found: mtnucratio [2021-01-09 23:53:28,037] multiqc [DEBUG ] No samples found: picard [2021-01-09 23:53:28,054] multiqc [DEBUG ] No samples found: prokka [2021-01-09 23:53:28,061] multiqc [DEBUG ] No samples found: samblaster [2021-01-09 23:53:28,155] multiqc [DEBUG ] No samples found: samtools [2021-01-09 23:53:28,175] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-01-09 23:53:28,200] multiqc [DEBUG ] No samples found: bamtools [2021-01-09 23:53:28,208] multiqc [DEBUG ] No samples found: jellyfish [2021-01-09 23:53:28,223] multiqc [DEBUG ] No samples found: vcftools [2021-01-09 23:53:28,248] multiqc [DEBUG ] No samples found: longranger [2021-01-09 23:53:28,267] multiqc [DEBUG ] No samples found: stacks [2021-01-09 23:53:28,323] multiqc [DEBUG ] No samples found: bbmap [2021-01-09 23:53:28,334] multiqc [DEBUG ] No samples found: bismark [2021-01-09 23:53:28,353] multiqc [DEBUG ] No samples found: biscuit [2021-01-09 23:53:28,396] multiqc [DEBUG ] No samples found: hicexplorer [2021-01-09 23:53:28,416] multiqc [DEBUG ] No samples found: hicup [2021-01-09 23:53:28,442] multiqc [DEBUG ] No samples found: hicpro [2021-01-09 23:53:28,451] multiqc [DEBUG ] No samples found: salmon [2021-01-09 23:53:28,472] multiqc [DEBUG ] No samples found: kallisto [2021-01-09 23:53:28,491] multiqc [DEBUG ] No samples found: slamdunk [2021-01-09 23:53:28,516] multiqc [DEBUG ] No samples found: star [2021-01-09 23:53:28,558] multiqc [DEBUG ] No samples found: hisat2 [2021-01-09 23:53:28,586] multiqc [DEBUG ] No samples found: tophat [2021-01-09 23:53:28,594] multiqc [DEBUG ] No samples found: bowtie2 [2021-01-09 23:53:28,616] multiqc [DEBUG ] No samples found: bowtie1 [2021-01-09 23:53:28,624] multiqc [DEBUG ] No samples found: kat [2021-01-09 23:53:28,631] multiqc [DEBUG ] No samples found: leehom [2021-01-09 23:53:28,658] multiqc [DEBUG ] No samples found: adapterRemoval [2021-01-09 23:53:28,665] multiqc [DEBUG ] No samples found: clipandmerge [2021-01-09 23:53:28,847] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_23_R2 [2021-01-09 23:53:28,849] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_23_R1 [2021-01-09 23:53:28,850] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_9_R2 [2021-01-09 23:53:28,851] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_22_R1 [2021-01-09 23:53:28,853] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_12_R2 [2021-01-09 23:53:28,854] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_17_R1 [2021-01-09 23:53:28,856] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_3_R1 [2021-01-09 23:53:28,857] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_13_R2 [2021-01-09 23:53:28,858] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_2_R1 [2021-01-09 23:53:28,860] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_21_R1 [2021-01-09 23:53:28,861] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_24_R2 [2021-01-09 23:53:28,863] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_5_R2 [2021-01-09 23:53:28,864] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_2_R2 [2021-01-09 23:53:28,865] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_1_R2 [2021-01-09 23:53:28,867] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_14_R2 [2021-01-09 23:53:28,868] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_18_R2 [2021-01-09 23:53:28,870] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_1_R1 [2021-01-09 23:53:28,871] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_1_R2 [2021-01-09 23:53:28,874] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_2_R1 [2021-01-09 23:53:28,875] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_2_R2 [2021-01-09 23:53:28,878] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_3_R1 [2021-01-09 23:53:28,879] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_3_R2 [2021-01-09 23:53:28,882] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_4_R1 [2021-01-09 23:53:28,883] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_4_R2 [2021-01-09 23:53:28,886] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_5_R1 [2021-01-09 23:53:28,887] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_5_R2 [2021-01-09 23:53:28,890] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_6_R1 [2021-01-09 23:53:28,891] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_6_R2 [2021-01-09 23:53:28,894] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_7_R1 [2021-01-09 23:53:28,895] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_7_R2 [2021-01-09 23:53:28,898] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_8_R1 [2021-01-09 23:53:28,899] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_8_R2 [2021-01-09 23:53:28,902] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_9_R1 [2021-01-09 23:53:28,903] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_9_R2 [2021-01-09 23:53:28,906] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_10_R1 [2021-01-09 23:53:28,907] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_10_R2 [2021-01-09 23:53:28,910] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_11_R1 [2021-01-09 23:53:28,911] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_11_R2 [2021-01-09 23:53:28,914] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_12_R1 [2021-01-09 23:53:28,915] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_12_R2 [2021-01-09 23:53:28,918] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_13_R1 [2021-01-09 23:53:28,919] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_13_R2 [2021-01-09 23:53:28,922] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_14_R1 [2021-01-09 23:53:28,923] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_14_R2 [2021-01-09 23:53:28,926] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_15_R1 [2021-01-09 23:53:28,927] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_15_R2 [2021-01-09 23:53:28,930] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_16_R1 [2021-01-09 23:53:28,931] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_16_R2 [2021-01-09 23:53:28,934] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_17_R1 [2021-01-09 23:53:28,935] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_17_R2 [2021-01-09 23:53:28,938] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_18_R1 [2021-01-09 23:53:28,939] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_18_R2 [2021-01-09 23:53:28,942] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_19_R1 [2021-01-09 23:53:28,943] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_19_R2 [2021-01-09 23:53:28,946] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_20_R1 [2021-01-09 23:53:28,947] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_20_R2 [2021-01-09 23:53:28,950] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_21_R1 [2021-01-09 23:53:28,951] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_21_R2 [2021-01-09 23:53:28,954] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_22_R1 [2021-01-09 23:53:28,955] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_22_R2 [2021-01-09 23:53:28,958] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_23_R1 [2021-01-09 23:53:28,959] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_23_R2 [2021-01-09 23:53:28,962] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_24_R1 [2021-01-09 23:53:28,963] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_24_R2 [2021-01-09 23:53:28,966] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_3_R2 [2021-01-09 23:53:28,967] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_22_R2 [2021-01-09 23:53:28,969] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_8_R2 [2021-01-09 23:53:28,970] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_6_R1 [2021-01-09 23:53:28,972] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_12_R1 [2021-01-09 23:53:28,973] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_15_R1 [2021-01-09 23:53:28,975] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_13_R1 [2021-01-09 23:53:28,976] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_10_R1 [2021-01-09 23:53:28,977] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_24_R1 [2021-01-09 23:53:28,979] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_8_R1 [2021-01-09 23:53:28,980] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_17_R2 [2021-01-09 23:53:28,982] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_10_R2 [2021-01-09 23:53:28,983] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_18_R1 [2021-01-09 23:53:28,984] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_11_R2 [2021-01-09 23:53:28,986] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_16_R1 [2021-01-09 23:53:28,987] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_20_R1 [2021-01-09 23:53:28,989] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_7_R2 [2021-01-09 23:53:28,990] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_5_R1 [2021-01-09 23:53:28,991] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_15_R2 [2021-01-09 23:53:28,993] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_4_R1 [2021-01-09 23:53:28,994] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_9_R1 [2021-01-09 23:53:28,996] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_14_R1 [2021-01-09 23:53:28,997] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_20_R2 [2021-01-09 23:53:28,998] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_7_R1 [2021-01-09 23:53:29,000] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_1_R1 [2021-01-09 23:53:29,001] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_1_R2 [2021-01-09 23:53:29,003] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_2_R1 [2021-01-09 23:53:29,005] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_2_R2 [2021-01-09 23:53:29,007] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_3_R1 [2021-01-09 23:53:29,008] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_3_R2 [2021-01-09 23:53:29,010] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_4_R1 [2021-01-09 23:53:29,012] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_4_R2 [2021-01-09 23:53:29,014] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_5_R1 [2021-01-09 23:53:29,015] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_5_R2 [2021-01-09 23:53:29,017] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_6_R1 [2021-01-09 23:53:29,019] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_6_R2 [2021-01-09 23:53:29,021] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_7_R1 [2021-01-09 23:53:29,023] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_7_R2 [2021-01-09 23:53:29,024] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_8_R1 [2021-01-09 23:53:29,026] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_8_R2 [2021-01-09 23:53:29,028] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_9_R1 [2021-01-09 23:53:29,030] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_9_R2 [2021-01-09 23:53:29,031] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_10_R1 [2021-01-09 23:53:29,033] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_10_R2 [2021-01-09 23:53:29,035] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_11_R1 [2021-01-09 23:53:29,037] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_11_R2 [2021-01-09 23:53:29,038] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_12_R1 [2021-01-09 23:53:29,040] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_12_R2 [2021-01-09 23:53:29,042] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_13_R1 [2021-01-09 23:53:29,044] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_13_R2 [2021-01-09 23:53:29,045] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_14_R1 [2021-01-09 23:53:29,047] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_14_R2 [2021-01-09 23:53:29,049] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_15_R1 [2021-01-09 23:53:29,050] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_15_R2 [2021-01-09 23:53:29,052] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_16_R1 [2021-01-09 23:53:29,054] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_16_R2 [2021-01-09 23:53:29,056] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_17_R1 [2021-01-09 23:53:29,057] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_17_R2 [2021-01-09 23:53:29,059] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_18_R1 [2021-01-09 23:53:29,061] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_18_R2 [2021-01-09 23:53:29,063] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_19_R1 [2021-01-09 23:53:29,064] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_19_R2 [2021-01-09 23:53:29,066] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_20_R1 [2021-01-09 23:53:29,068] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_20_R2 [2021-01-09 23:53:29,070] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_21_R1 [2021-01-09 23:53:29,071] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_21_R2 [2021-01-09 23:53:29,073] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_22_R1 [2021-01-09 23:53:29,075] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_22_R2 [2021-01-09 23:53:29,077] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_4_R2 [2021-01-09 23:53:29,078] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_19_R1 [2021-01-09 23:53:29,079] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_19_R2 [2021-01-09 23:53:29,081] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_6_R2 [2021-01-09 23:53:29,082] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_21_R2 [2021-01-09 23:53:29,084] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_11_R1 [2021-01-09 23:53:29,085] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_1_R1 [2021-01-09 23:53:29,086] multiqc.modules.cutadapt.cutadapt [DEBUG ] Duplicate sample name found! Overwriting: zr3644_16_R2 [2021-01-09 23:53:29,088] multiqc.modules.cutadapt.cutadapt [INFO ] Found 48 reports [2021-01-09 23:53:29,116] multiqc [DEBUG ] No samples found: flexbar [2021-01-09 23:53:29,137] multiqc [DEBUG ] No samples found: trimmomatic [2021-01-09 23:53:29,147] multiqc [DEBUG ] No samples found: skewer [2021-01-09 23:53:29,156] multiqc [DEBUG ] No samples found: sortmerna [2021-01-09 23:53:29,186] multiqc [DEBUG ] No samples found: biobloomtools [2021-01-09 23:53:29,215] multiqc [DEBUG ] No samples found: fastq_screen [2021-01-09 23:53:29,287] multiqc [DEBUG ] No samples found: afterqc [2021-01-09 23:53:29,297] multiqc [DEBUG ] No samples found: fastp [2021-01-09 23:53:43,652] multiqc.modules.fastqc.fastqc [INFO ] Found 48 reports [2021-01-09 23:53:44,434] multiqc [DEBUG ] No samples found: minionqc [2021-01-09 23:53:44,449] multiqc [DEBUG ] No samples found: mosdepth [2021-01-09 23:53:44,468] multiqc [DEBUG ] No samples found: clusterflow [2021-01-09 23:53:44,493] multiqc [DEBUG ] No samples found: bcl2fastq [2021-01-09 23:53:44,510] multiqc [DEBUG ] No samples found: interop [2021-01-09 23:53:44,543] multiqc [DEBUG ] No samples found: flash [2021-01-09 23:53:44,577] multiqc [DEBUG ] No samples found: seqyclean [2021-01-09 23:53:44,701] multiqc [INFO ] Compressing plot data [2021-01-09 23:53:45,610] multiqc [INFO ] Report : multiqc_report.html [2021-01-09 23:53:45,610] multiqc [INFO ] Data : multiqc_data [2021-01-09 23:53:45,613] multiqc [DEBUG ] Moving data file from '/tmp/tmpj4vr33cv/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/multiqc_data' [2021-01-09 23:53:45,614] multiqc [DEBUG ] Moving data file from '/tmp/tmpj4vr33cv/multiqc_data/multiqc_cutadapt.txt' to '/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/multiqc_data' [2021-01-09 23:53:45,615] multiqc [DEBUG ] Moving data file from '/tmp/tmpj4vr33cv/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/multiqc_data' [2021-01-09 23:53:45,616] multiqc [DEBUG ] Moving data file from '/tmp/tmpj4vr33cv/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/multiqc_data' [2021-01-09 23:53:45,616] multiqc [DEBUG ] Moving data file from '/tmp/tmpj4vr33cv/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/multiqc_data' [2021-01-09 23:53:45,617] multiqc [DEBUG ] Moving data file from '/tmp/tmpj4vr33cv/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore/multiqc_data' [2021-01-09 23:53:46,466] multiqc [INFO ] MultiQC complete