zr3644_9_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 25551910 lines in total Total number of methylation call strings processed: 51103820 Final Cytosine Methylation Report ================================= Total number of C's analysed: 585196152 Total methylated C's in CpG context: 8185845 Total methylated C's in CHG context: 483963 Total methylated C's in CHH context: 2033084 Total C to T conversions in CpG context: 66601575 Total C to T conversions in CHG context: 101618372 Total C to T conversions in CHH context: 406273313 C methylated in CpG context: 10.9% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%