/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_9_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_9_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:55 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
47573665
Paired-end alignments with a unique best hit
29242056
Pairs without alignments under any condition
11968391
Pairs that did not map uniquely
6363218
Genomic sequence context not extractable (edges of chromosomes)
3271
Cytosine Methylation
Total C's analysed
1019347442
Methylated C's in CpG context
14622783
Methylated C's in CHG context
853231
Methylated C's in CHH context
3562620
Methylated C's in Unknown context
36997
Unmethylated C's in CpG context
116851567
Unmethylated C's in CHG context
178719809
Unmethylated C's in CHH context
704737432
Unmethylated C's in Unknown context
2493127
Percentage methylation (CpG context)
11.1%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7340864
original top strand
CTOT
7275172
complementary to original top strand
CTOB
7277422
complementary to original bottom strand
OB
7345327
original bottom strand
Deduplication
Alignments analysed
29238785
Unique alignments
25551910
Duplicates removed
3686875
Duplicated alignments were found at 3203203 different positions
