/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_8_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_8_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:55 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
42336845
Paired-end alignments with a unique best hit
26007499
Pairs without alignments under any condition
11049243
Pairs that did not map uniquely
5280103
Genomic sequence context not extractable (edges of chromosomes)
3208
Cytosine Methylation
Total C's analysed
917080681
Methylated C's in CpG context
12681846
Methylated C's in CHG context
798448
Methylated C's in CHH context
3381738
Methylated C's in Unknown context
32857
Unmethylated C's in CpG context
104398980
Unmethylated C's in CHG context
159572763
Unmethylated C's in CHH context
636246906
Unmethylated C's in Unknown context
2250422
Percentage methylation (CpG context)
10.8%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6495653
original top strand
CTOT
6499419
complementary to original top strand
CTOB
6502055
complementary to original bottom strand
OB
6507164
original bottom strand
Deduplication
Alignments analysed
26004291
Unique alignments
23158534
Duplicates removed
2845757
Duplicated alignments were found at 2515230 different positions
