/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_7_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_7_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:54 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
81572749
Paired-end alignments with a unique best hit
49808265
Pairs without alignments under any condition
22049639
Pairs that did not map uniquely
9714845
Genomic sequence context not extractable (edges of chromosomes)
6088
Cytosine Methylation
Total C's analysed
1760829695
Methylated C's in CpG context
23877029
Methylated C's in CHG context
1490398
Methylated C's in CHH context
6273620
Methylated C's in Unknown context
60584
Unmethylated C's in CpG context
198654689
Unmethylated C's in CHG context
303395937
Unmethylated C's in CHH context
1227138022
Unmethylated C's in Unknown context
4448566
Percentage methylation (CpG context)
10.7%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
12445023
original top strand
CTOT
12446983
complementary to original top strand
CTOB
12454757
complementary to original bottom strand
OB
12455414
original bottom strand
Deduplication
Alignments analysed
49802177
Unique alignments
44057955
Duplicates removed
5744222
Duplicated alignments were found at 5009585 different positions
