/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_6_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_6_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:54 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
53174813
Paired-end alignments with a unique best hit
32883973
Pairs without alignments under any condition
13870904
Pairs that did not map uniquely
6419936
Genomic sequence context not extractable (edges of chromosomes)
3856
Cytosine Methylation
Total C's analysed
1163306727
Methylated C's in CpG context
15519079
Methylated C's in CHG context
987998
Methylated C's in CHH context
4159215
Methylated C's in Unknown context
39191
Unmethylated C's in CpG context
131573132
Unmethylated C's in CHG context
201241492
Unmethylated C's in CHH context
809825811
Unmethylated C's in Unknown context
2904130
Percentage methylation (CpG context)
10.6%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8232092
original top strand
CTOT
8215780
complementary to original top strand
CTOB
8209212
complementary to original bottom strand
OB
8223033
original bottom strand
Deduplication
Alignments analysed
32880117
Unique alignments
28863413
Duplicates removed
4016704
Duplicated alignments were found at 3502031 different positions
