zr3644_5_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 24112850 lines in total Total number of methylation call strings processed: 48225700 Final Cytosine Methylation Report ================================= Total number of C's analysed: 589371788 Total methylated C's in CpG context: 7735787 Total methylated C's in CHG context: 493412 Total methylated C's in CHH context: 2060645 Total C to T conversions in CpG context: 66114577 Total C to T conversions in CHG context: 101010033 Total C to T conversions in CHH context: 411957334 C methylated in CpG context: 10.5% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%