/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_5_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_5_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:54 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
44083656
Paired-end alignments with a unique best hit
27062582
Pairs without alignments under any condition
11774109
Pairs that did not map uniquely
5246965
Genomic sequence context not extractable (edges of chromosomes)
3097
Cytosine Methylation
Total C's analysed
958806516
Methylated C's in CpG context
12849444
Methylated C's in CHG context
809839
Methylated C's in CHH context
3383314
Methylated C's in Unknown context
32893
Unmethylated C's in CpG context
108112391
Unmethylated C's in CHG context
165705948
Unmethylated C's in CHH context
667945580
Unmethylated C's in Unknown context
2393863
Percentage methylation (CpG context)
10.6%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6715808
original top strand
CTOT
6808129
complementary to original top strand
CTOB
6813222
complementary to original bottom strand
OB
6722326
original bottom strand
Deduplication
Alignments analysed
27059485
Unique alignments
24112850
Duplicates removed
2946635
Duplicated alignments were found at 2601507 different positions
