zr3644_4_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 26727717 lines in total Total number of methylation call strings processed: 53455434 Final Cytosine Methylation Report ================================= Total number of C's analysed: 647545749 Total methylated C's in CpG context: 8230533 Total methylated C's in CHG context: 516089 Total methylated C's in CHH context: 2143339 Total C to T conversions in CpG context: 73038669 Total C to T conversions in CHG context: 110297480 Total C to T conversions in CHH context: 453319639 C methylated in CpG context: 10.1% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%