/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_4_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_4_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:54 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
49306248
Paired-end alignments with a unique best hit
30294123
Pairs without alignments under any condition
13031821
Pairs that did not map uniquely
5980304
Genomic sequence context not extractable (edges of chromosomes)
3392
Cytosine Methylation
Total C's analysed
1072084783
Methylated C's in CpG context
13911788
Methylated C's in CHG context
863058
Methylated C's in CHH context
3571494
Methylated C's in Unknown context
35667
Unmethylated C's in CpG context
121521063
Unmethylated C's in CHG context
184074892
Unmethylated C's in CHH context
748142488
Unmethylated C's in Unknown context
2695306
Percentage methylation (CpG context)
10.3%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7582775
original top strand
CTOT
7560867
complementary to original top strand
CTOB
7564330
complementary to original bottom strand
OB
7582759
original bottom strand
Deduplication
Alignments analysed
30290731
Unique alignments
26727717
Duplicates removed
3563014
Duplicated alignments were found at 3137361 different positions
