/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_3_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_3_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:54 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
38913609
Paired-end alignments with a unique best hit
23805179
Pairs without alignments under any condition
10343037
Pairs that did not map uniquely
4765393
Genomic sequence context not extractable (edges of chromosomes)
3159
Cytosine Methylation
Total C's analysed
841165030
Methylated C's in CpG context
11246015
Methylated C's in CHG context
700201
Methylated C's in CHH context
2945412
Methylated C's in Unknown context
28949
Unmethylated C's in CpG context
95610735
Unmethylated C's in CHG context
145538838
Unmethylated C's in CHH context
585123829
Unmethylated C's in Unknown context
2102258
Percentage methylation (CpG context)
10.5%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5932391
original top strand
CTOT
5956670
complementary to original top strand
CTOB
5970104
complementary to original bottom strand
OB
5942855
original bottom strand
Deduplication
Alignments analysed
23802020
Unique alignments
21326564
Duplicates removed
2475456
Duplicated alignments were found at 2188277 different positions
