/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_2_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_2_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:54 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
55025914
Paired-end alignments with a unique best hit
33615008
Pairs without alignments under any condition
14806238
Pairs that did not map uniquely
6604668
Genomic sequence context not extractable (edges of chromosomes)
4620
Cytosine Methylation
Total C's analysed
1197280356
Methylated C's in CpG context
15775590
Methylated C's in CHG context
1001189
Methylated C's in CHH context
4199273
Methylated C's in Unknown context
39115
Unmethylated C's in CpG context
135568039
Unmethylated C's in CHG context
206239669
Unmethylated C's in CHH context
834496596
Unmethylated C's in Unknown context
3014832
Percentage methylation (CpG context)
10.4%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8415908
original top strand
CTOT
8397912
complementary to original top strand
CTOB
8393898
complementary to original bottom strand
OB
8402670
original bottom strand
Deduplication
Alignments analysed
33610388
Unique alignments
29344794
Duplicates removed
4265594
Duplicated alignments were found at 3696181 different positions
