zr3644_24_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 28564805 lines in total Total number of methylation call strings processed: 57129610 Final Cytosine Methylation Report ================================= Total number of C's analysed: 696581319 Total methylated C's in CpG context: 9199601 Total methylated C's in CHG context: 591767 Total methylated C's in CHH context: 2471218 Total C to T conversions in CpG context: 78991176 Total C to T conversions in CHG context: 120496784 Total C to T conversions in CHH context: 484830773 C methylated in CpG context: 10.4% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%