/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_24_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_24_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:54 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
52244045
Paired-end alignments with a unique best hit
32479152
Pairs without alignments under any condition
13303250
Pairs that did not map uniquely
6461643
Genomic sequence context not extractable (edges of chromosomes)
4026
Cytosine Methylation
Total C's analysed
1152358324
Methylated C's in CpG context
15525678
Methylated C's in CHG context
990475
Methylated C's in CHH context
4125982
Methylated C's in Unknown context
38120
Unmethylated C's in CpG context
131489526
Unmethylated C's in CHG context
201060109
Unmethylated C's in CHH context
799166554
Unmethylated C's in Unknown context
2835426
Percentage methylation (CpG context)
10.6%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8114827
original top strand
CTOT
8116900
complementary to original top strand
CTOB
8121612
complementary to original bottom strand
OB
8121787
original bottom strand
Deduplication
Alignments analysed
32475126
Unique alignments
28564805
Duplicates removed
3910321
Duplicated alignments were found at 3411445 different positions
