/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_23_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_23_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:53 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
39902509
Paired-end alignments with a unique best hit
24721544
Pairs without alignments under any condition
10161807
Pairs that did not map uniquely
5019158
Genomic sequence context not extractable (edges of chromosomes)
2976
Cytosine Methylation
Total C's analysed
871034956
Methylated C's in CpG context
11700596
Methylated C's in CHG context
750578
Methylated C's in CHH context
3129842
Methylated C's in Unknown context
29479
Unmethylated C's in CpG context
99735567
Unmethylated C's in CHG context
151894105
Unmethylated C's in CHH context
603824268
Unmethylated C's in Unknown context
2139223
Percentage methylation (CpG context)
10.5%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6208454
original top strand
CTOT
6151521
complementary to original top strand
CTOB
6155092
complementary to original bottom strand
OB
6203501
original bottom strand
Deduplication
Alignments analysed
24718568
Unique alignments
21853588
Duplicates removed
2864980
Duplicated alignments were found at 2528512 different positions
