/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_22_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_22_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:53 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
47019646
Paired-end alignments with a unique best hit
29164293
Pairs without alignments under any condition
12055540
Pairs that did not map uniquely
5799813
Genomic sequence context not extractable (edges of chromosomes)
3674
Cytosine Methylation
Total C's analysed
1035254685
Methylated C's in CpG context
14078388
Methylated C's in CHG context
898075
Methylated C's in CHH context
3733158
Methylated C's in Unknown context
33672
Unmethylated C's in CpG context
118463031
Unmethylated C's in CHG context
181180018
Unmethylated C's in CHH context
716902015
Unmethylated C's in Unknown context
2536356
Percentage methylation (CpG context)
10.6%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7261504
original top strand
CTOT
7309226
complementary to original top strand
CTOB
7317228
complementary to original bottom strand
OB
7272661
original bottom strand
Deduplication
Alignments analysed
29160619
Unique alignments
25736671
Duplicates removed
3423948
Duplicated alignments were found at 3003485 different positions
