zr3644_21_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 27320626 lines in total Total number of methylation call strings processed: 54641252 Final Cytosine Methylation Report ================================= Total number of C's analysed: 671295159 Total methylated C's in CpG context: 8897366 Total methylated C's in CHG context: 566089 Total methylated C's in CHH context: 2357111 Total C to T conversions in CpG context: 75903501 Total C to T conversions in CHG context: 115427065 Total C to T conversions in CHH context: 468144027 C methylated in CpG context: 10.5% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%