/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_21_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_21_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:53 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
50457301
Paired-end alignments with a unique best hit
30932612
Pairs without alignments under any condition
13479625
Pairs that did not map uniquely
6045064
Genomic sequence context not extractable (edges of chromosomes)
3820
Cytosine Methylation
Total C's analysed
1092232309
Methylated C's in CpG context
14831994
Methylated C's in CHG context
933395
Methylated C's in CHH context
3877033
Methylated C's in Unknown context
36631
Unmethylated C's in CpG context
124348339
Unmethylated C's in CHG context
189579802
Unmethylated C's in CHH context
758661746
Unmethylated C's in Unknown context
2715605
Percentage methylation (CpG context)
10.7%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7737803
original top strand
CTOT
7729999
complementary to original top strand
CTOB
7725591
complementary to original bottom strand
OB
7735399
original bottom strand
Deduplication
Alignments analysed
30928792
Unique alignments
27320626
Duplicates removed
3608166
Duplicated alignments were found at 3172581 different positions
