/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_20_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_20_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:53 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
53390071
Paired-end alignments with a unique best hit
32489129
Pairs without alignments under any condition
14599336
Pairs that did not map uniquely
6301606
Genomic sequence context not extractable (edges of chromosomes)
3848
Cytosine Methylation
Total C's analysed
1148855238
Methylated C's in CpG context
15446101
Methylated C's in CHG context
997641
Methylated C's in CHH context
4136554
Methylated C's in Unknown context
42585
Unmethylated C's in CpG context
130764316
Unmethylated C's in CHG context
199305094
Unmethylated C's in CHH context
798205532
Unmethylated C's in Unknown context
2810117
Percentage methylation (CpG context)
10.6%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7817880
original top strand
CTOT
8415796
complementary to original top strand
CTOB
8422205
complementary to original bottom strand
OB
7829400
original bottom strand
Deduplication
Alignments analysed
32485281
Unique alignments
28553777
Duplicates removed
3931504
Duplicated alignments were found at 3449859 different positions
