/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_1_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_1_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:53 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
50993451
Paired-end alignments with a unique best hit
31687838
Pairs without alignments under any condition
12773379
Pairs that did not map uniquely
6532234
Genomic sequence context not extractable (edges of chromosomes)
3518
Cytosine Methylation
Total C's analysed
1115774564
Methylated C's in CpG context
13928703
Methylated C's in CHG context
914564
Methylated C's in CHH context
3838735
Methylated C's in Unknown context
35679
Unmethylated C's in CpG context
127975064
Unmethylated C's in CHG context
194760133
Unmethylated C's in CHH context
774357365
Unmethylated C's in Unknown context
2721469
Percentage methylation (CpG context)
9.8%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7969382
original top strand
CTOT
7870081
complementary to original top strand
CTOB
7871018
complementary to original bottom strand
OB
7973839
original bottom strand
Deduplication
Alignments analysed
31684320
Unique alignments
27716181
Duplicates removed
3968139
Duplicated alignments were found at 3451332 different positions
