/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_19_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_19_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:52 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
48641567
Paired-end alignments with a unique best hit
30051443
Pairs without alignments under any condition
12637251
Pairs that did not map uniquely
5952873
Genomic sequence context not extractable (edges of chromosomes)
3637
Cytosine Methylation
Total C's analysed
1058145249
Methylated C's in CpG context
14132667
Methylated C's in CHG context
903036
Methylated C's in CHH context
3797661
Methylated C's in Unknown context
34754
Unmethylated C's in CpG context
120516438
Unmethylated C's in CHG context
184031862
Unmethylated C's in CHH context
734763585
Unmethylated C's in Unknown context
2613391
Percentage methylation (CpG context)
10.5%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7510668
original top strand
CTOT
7514424
complementary to original top strand
CTOB
7516518
complementary to original bottom strand
OB
7506196
original bottom strand
Deduplication
Alignments analysed
30047806
Unique alignments
26814938
Duplicates removed
3232868
Duplicated alignments were found at 2852110 different positions
