zr3644_18_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 28161722 lines in total Total number of methylation call strings processed: 56323444 Final Cytosine Methylation Report ================================= Total number of C's analysed: 680956547 Total methylated C's in CpG context: 9228355 Total methylated C's in CHG context: 581444 Total methylated C's in CHH context: 2419643 Total C to T conversions in CpG context: 77023847 Total C to T conversions in CHG context: 118223750 Total C to T conversions in CHH context: 473479508 C methylated in CpG context: 10.7% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%