/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_18_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_18_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:52 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
50943423
Paired-end alignments with a unique best hit
31728340
Pairs without alignments under any condition
12874754
Pairs that did not map uniquely
6340329
Genomic sequence context not extractable (edges of chromosomes)
4296
Cytosine Methylation
Total C's analysed
1120635638
Methylated C's in CpG context
15532499
Methylated C's in CHG context
969958
Methylated C's in CHH context
4028886
Methylated C's in Unknown context
36820
Unmethylated C's in CpG context
127760849
Unmethylated C's in CHG context
196373738
Unmethylated C's in CHH context
775969708
Unmethylated C's in Unknown context
2718637
Percentage methylation (CpG context)
10.8%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7941013
original top strand
CTOT
7908280
complementary to original top strand
CTOB
7921957
complementary to original bottom strand
OB
7952794
original bottom strand
Deduplication
Alignments analysed
31724044
Unique alignments
28161722
Duplicates removed
3562322
Duplicated alignments were found at 3143623 different positions
