/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_17_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_17_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:52 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
57429743
Paired-end alignments with a unique best hit
35424111
Pairs without alignments under any condition
14427268
Pairs that did not map uniquely
7578364
Genomic sequence context not extractable (edges of chromosomes)
4604
Cytosine Methylation
Total C's analysed
1254819599
Methylated C's in CpG context
17184173
Methylated C's in CHG context
1093647
Methylated C's in CHH context
4560361
Methylated C's in Unknown context
41487
Unmethylated C's in CpG context
144351881
Unmethylated C's in CHG context
219807459
Unmethylated C's in CHH context
867822078
Unmethylated C's in Unknown context
3050381
Percentage methylation (CpG context)
10.6%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8830397
original top strand
CTOT
8873766
complementary to original top strand
CTOB
8878358
complementary to original bottom strand
OB
8836986
original bottom strand
Deduplication
Alignments analysed
35419507
Unique alignments
30969523
Duplicates removed
4449984
Duplicated alignments were found at 3833712 different positions
